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The map label for this gene is atpD1

Identifier: 119944239

GI number: 119944239

Start: 587411

End: 588868

Strand: Direct

Name: atpD1

Synonym: Ping_0463

Alternate gene names: 119944239

Gene position: 587411-588868 (Clockwise)

Preceding gene: 119944237

Following gene: 119944240

Centisome position: 12.88

GC content: 47.87

Gene sequence:

>1458_bases
ATGCTCAAAGATCCCAAGCAGGTACATGCCCCTAATTTTGGTGTTGTCGTTTCGGTACGAGGCAGTGTTGTGGATATCAG
GTTTGATGAATCTTTGCCGCCCATTCATCGTTTATTACGTGTTGTTGGGATTTTTATTGTTATTGAGGTACTTGCACAAC
GTGATGCAAGGGTGGTGCGCGGTATTGCATTAACGCCCACTCAAGGTTTGGCCCGTGGTATGCGGGTCGAAGACAGTGGC
GGGCCGTTAACTGCCCCCGTAGGTAAGGCGATCATCTCGCGCATGTTTGATGTTTTTGGCAATACCATAGATAACGGACC
ACTTTTAAATAATGTGCAGTGGCGATCTGTACATCGGGCGCCTCCAACGCTGTCGCAGCGCTCTACCCAATCGGAAATTT
TTGTGACTGGTATCAAGGTGATTGATGTTTTAGTACCGCTTGAGCGTGGTGGGAAAGCGGGATTATTTGGCGGGGCGGGT
GTTGGTAAAACCGTATTATTGACCGAGATGATTCATAATATGGTAAGCCATCACAACGGCATCAGTATTTTTTGCGGTAT
TGGCGAACGCTCGCGTGAGGGTGAAGAGCTCTACCGGGAAATGAAGGAGGCGGGTGTATTACCTAATATGGTCATGATAT
TTGGGCAGATGAATGAGCCTCCCGGAGCCCGTTTTCGCGTTGGTCATGCGGCGTTAACCATGGCGGAATATTTCCGCGAT
GATGAAAGCCGCGATGTACTGTTACTGATCGATAATATTTTTCGTTTTATTCAGGCGGGTTCAGAGATCTCTGGTTTGAT
GGGGCAGATGCCTTCACGTCTAGGTTATCAACCGACTATGGGCTCAGAGCTTTCGAGTCTTGAAGAGCGTATCGCCAATA
CCGAGGATGGTGCGATCACCTCCATTCAAGCAGTTTATGTTCCGGCTGATGATTTTACCGATCCCGCGGCCGTACACACT
TTTTCGCACCTGTCCGCCTCTATTGTGCTGTCGCGCCAACGTGCTAGTGAAGGCCTCTATCCTTCGATTGATCCTTTGCA
ATCCAGTTCCAAAATGGCCACCGCCGGGATCATTGGCGAACGCCATTATAATCTCGCTCAGGAAGTTCGTCGTACACTGG
CTAAATATGACGATCTTAAAGATATTATTGCGATGCTCGGTCTTGAGCAGTTGAATGTTGACGATCGCAAACTGGTAGGA
CGTGCGCGGCGTCTGGAGCGTTTTTTTACCCAACCTTTTTTTAGCACTGAACAGTTTTCGACAATGGAGGGTAAATTAGT
CAGTTTGGACGATGCCCTTGATGGCTGTGAGCGGATTCTGGCGGATGAATTTGCAGACTACCCGGAAAGTGCCTTGTATA
TGATAGGCGCAGTGGATGAAGTCAAAATAAACAATAAAGCAGCGCAGCATACAAAACAGCAGAAGGAAAAAAATAATGGC
AGCACAGATGTAAATTAA

Upstream 100 bases:

>100_bases
GATTTATGCTCATAACCGATCTATTATTTTAATCATCACTGGTGCTTCTATCTCGATTTTTAATAAATGCACTTATTTGA
AACGACTAACGGGTAGGAAA

Downstream 100 bases:

>100_bases
AATTTATTACCTTGATGGTATTGCAGTCCTAACTTCAGAAAGTGCCTTGTATATGATAGGCGCAGTGGATGAGGTCAAAA
TAAACAATAAAGCAGCGCAG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MLKDPKQVHAPNFGVVVSVRGSVVDIRFDESLPPIHRLLRVVGIFIVIEVLAQRDARVVRGIALTPTQGLARGMRVEDSG
GPLTAPVGKAIISRMFDVFGNTIDNGPLLNNVQWRSVHRAPPTLSQRSTQSEIFVTGIKVIDVLVPLERGGKAGLFGGAG
VGKTVLLTEMIHNMVSHHNGISIFCGIGERSREGEELYREMKEAGVLPNMVMIFGQMNEPPGARFRVGHAALTMAEYFRD
DESRDVLLLIDNIFRFIQAGSEISGLMGQMPSRLGYQPTMGSELSSLEERIANTEDGAITSIQAVYVPADDFTDPAAVHT
FSHLSASIVLSRQRASEGLYPSIDPLQSSSKMATAGIIGERHYNLAQEVRRTLAKYDDLKDIIAMLGLEQLNVDDRKLVG
RARRLERFFTQPFFSTEQFSTMEGKLVSLDDALDGCERILADEFADYPESALYMIGAVDEVKINNKAAQHTKQQKEKNNG
STDVN

Sequences:

>Translated_485_residues
MLKDPKQVHAPNFGVVVSVRGSVVDIRFDESLPPIHRLLRVVGIFIVIEVLAQRDARVVRGIALTPTQGLARGMRVEDSG
GPLTAPVGKAIISRMFDVFGNTIDNGPLLNNVQWRSVHRAPPTLSQRSTQSEIFVTGIKVIDVLVPLERGGKAGLFGGAG
VGKTVLLTEMIHNMVSHHNGISIFCGIGERSREGEELYREMKEAGVLPNMVMIFGQMNEPPGARFRVGHAALTMAEYFRD
DESRDVLLLIDNIFRFIQAGSEISGLMGQMPSRLGYQPTMGSELSSLEERIANTEDGAITSIQAVYVPADDFTDPAAVHT
FSHLSASIVLSRQRASEGLYPSIDPLQSSSKMATAGIIGERHYNLAQEVRRTLAKYDDLKDIIAMLGLEQLNVDDRKLVG
RARRLERFFTQPFFSTEQFSTMEGKLVSLDDALDGCERILADEFADYPESALYMIGAVDEVKINNKAAQHTKQQKEKNNG
STDVN
>Mature_485_residues
MLKDPKQVHAPNFGVVVSVRGSVVDIRFDESLPPIHRLLRVVGIFIVIEVLAQRDARVVRGIALTPTQGLARGMRVEDSG
GPLTAPVGKAIISRMFDVFGNTIDNGPLLNNVQWRSVHRAPPTLSQRSTQSEIFVTGIKVIDVLVPLERGGKAGLFGGAG
VGKTVLLTEMIHNMVSHHNGISIFCGIGERSREGEELYREMKEAGVLPNMVMIFGQMNEPPGARFRVGHAALTMAEYFRD
DESRDVLLLIDNIFRFIQAGSEISGLMGQMPSRLGYQPTMGSELSSLEERIANTEDGAITSIQAVYVPADDFTDPAAVHT
FSHLSASIVLSRQRASEGLYPSIDPLQSSSKMATAGIIGERHYNLAQEVRRTLAKYDDLKDIIAMLGLEQLNVDDRKLVG
RARRLERFFTQPFFSTEQFSTMEGKLVSLDDALDGCERILADEFADYPESALYMIGAVDEVKINNKAAQHTKQQKEKNNG
STDVN

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=468, Percent_Identity=48.5042735042735, Blast_Score=466, Evalue=1e-131,
Organism=Homo sapiens, GI19913428, Length=377, Percent_Identity=24.4031830238727, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI19913426, Length=377, Percent_Identity=23.8726790450928, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI19913424, Length=338, Percent_Identity=26.6272189349112, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI50345984, Length=352, Percent_Identity=24.4318181818182, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI4757810, Length=352, Percent_Identity=24.4318181818182, Blast_Score=98, Evalue=2e-20,
Organism=Escherichia coli, GI1790170, Length=451, Percent_Identity=47.450110864745, Blast_Score=439, Evalue=1e-124,
Organism=Escherichia coli, GI1788251, Length=360, Percent_Identity=29.4444444444444, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI1790172, Length=388, Percent_Identity=25.5154639175258, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=476, Percent_Identity=48.3193277310924, Blast_Score=458, Evalue=1e-129,
Organism=Caenorhabditis elegans, GI17565854, Length=330, Percent_Identity=26.969696969697, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=365, Percent_Identity=26.027397260274, Blast_Score=115, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=354, Percent_Identity=24.5762711864407, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=351, Percent_Identity=24.5014245014245, Blast_Score=99, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=351, Percent_Identity=24.5014245014245, Blast_Score=98, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=329, Percent_Identity=24.3161094224924, Blast_Score=86, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=460, Percent_Identity=48.4782608695652, Blast_Score=461, Evalue=1e-131,
Organism=Saccharomyces cerevisiae, GI6319603, Length=356, Percent_Identity=26.9662921348315, Blast_Score=120, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6319370, Length=401, Percent_Identity=23.4413965087282, Blast_Score=92, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6320016, Length=270, Percent_Identity=25.9259259259259, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24638766, Length=456, Percent_Identity=49.1228070175439, Blast_Score=460, Evalue=1e-129,
Organism=Drosophila melanogaster, GI28574560, Length=457, Percent_Identity=49.0153172866521, Blast_Score=454, Evalue=1e-128,
Organism=Drosophila melanogaster, GI20129479, Length=339, Percent_Identity=28.9085545722714, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24583988, Length=332, Percent_Identity=27.710843373494, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583986, Length=332, Percent_Identity=27.710843373494, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583984, Length=332, Percent_Identity=27.710843373494, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24583992, Length=332, Percent_Identity=27.4096385542169, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI281361666, Length=362, Percent_Identity=24.3093922651934, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24646341, Length=362, Percent_Identity=24.3093922651934, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI17136796, Length=362, Percent_Identity=24.3093922651934, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24658560, Length=353, Percent_Identity=23.5127478753541, Blast_Score=92, Evalue=9e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB1_PSYIN (A1SS55)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_941919.1
- ProteinModelPortal:   A1SS55
- SMR:   A1SS55
- STRING:   A1SS55
- GeneID:   4626740
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0463
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   AVHTFSH
- ProtClustDB:   PRK09280
- BioCyc:   PING357804:PING_0463-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR017691
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- InterPro:   IPR002885
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR03305
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 53354; Mature: 53354

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDPKQVHAPNFGVVVSVRGSVVDIRFDESLPPIHRLLRVVGIFIVIEVLAQRDARVVR
CCCCCCHHCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIALTPTQGLARGMRVEDSGGPLTAPVGKAIISRMFDVFGNTIDNGPLLNNVQWRSVHRA
CEEECCCHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
PPTLSQRSTQSEIFVTGIKVIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVSHHNG
CCCCCCCCCCCHHEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
ISIFCGIGERSREGEELYREMKEAGVLPNMVMIFGQMNEPPGARFRVGHAALTMAEYFRD
EEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCCEEEHHHHHHHHHHHCC
DESRDVLLLIDNIFRFIQAGSEISGLMGQMPSRLGYQPTMGSELSSLEERIANTEDGAIT
CCCCCEEEEHHHHHHHHHCCCHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHCCCCCCCEE
SIQAVYVPADDFTDPAAVHTFSHLSASIVLSRQRASEGLYPSIDPLQSSSKMATAGIIGE
EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
RHYNLAQEVRRTLAKYDDLKDIIAMLGLEQLNVDDRKLVGRARRLERFFTQPFFSTEQFS
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH
TMEGKLVSLDDALDGCERILADEFADYPESALYMIGAVDEVKINNKAAQHTKQQKEKNNG
HCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCEEECCHHHHHHHHHHHHCCC
STDVN
CCCCC
>Mature Secondary Structure
MLKDPKQVHAPNFGVVVSVRGSVVDIRFDESLPPIHRLLRVVGIFIVIEVLAQRDARVVR
CCCCCCHHCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIALTPTQGLARGMRVEDSGGPLTAPVGKAIISRMFDVFGNTIDNGPLLNNVQWRSVHRA
CEEECCCHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
PPTLSQRSTQSEIFVTGIKVIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVSHHNG
CCCCCCCCCCCHHEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
ISIFCGIGERSREGEELYREMKEAGVLPNMVMIFGQMNEPPGARFRVGHAALTMAEYFRD
EEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCCEEEHHHHHHHHHHHCC
DESRDVLLLIDNIFRFIQAGSEISGLMGQMPSRLGYQPTMGSELSSLEERIANTEDGAIT
CCCCCEEEEHHHHHHHHHCCCHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHCCCCCCCEE
SIQAVYVPADDFTDPAAVHTFSHLSASIVLSRQRASEGLYPSIDPLQSSSKMATAGIIGE
EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
RHYNLAQEVRRTLAKYDDLKDIIAMLGLEQLNVDDRKLVGRARRLERFFTQPFFSTEQFS
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH
TMEGKLVSLDDALDGCERILADEFADYPESALYMIGAVDEVKINNKAAQHTKQQKEKNNG
HCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCEEECCHHHHHHHHHHHHCCC
STDVN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA