Click here to switch to the map view.

The map label for this gene is lptF [H]

Identifier: 119944176

GI number: 119944176

Start: 504058

End: 505134

Strand: Direct

Name: lptF [H]

Synonym: Ping_0396

Alternate gene names: 119944176

Gene position: 504058-505134 (Clockwise)

Preceding gene: 119944172

Following gene: 119944177

Centisome position: 11.05

GC content: 40.85

Gene sequence:

>1077_bases
GTGATACTTCTTCGTTATTTGATGCTCGAAACATTTAAAAGCCAGATCGGTATTCTGTTTGTTTTAGTGCTTATTTTTGT
TAGTCAAAAATTTATAACCATTCTTGCTCAAGCTATTAATGGTGTTATCCCTGCAGATTTGGTAATGACCCTGTTGTATT
TGAACTTACCACAACTGGGTACGCTAATGTTGCCTATTAGTTTTTATCTTGCAGTGCTTTTTGCCCATGGCAGGTTACAC
GGCGAAAGTGAAATGATCGCGATGAGCTCCTGTGGATATAGTCCCAATAATGTCTTGAAAGCGACTCTGTTATTATCCTT
TTTAACCTTCGCTTTTGCGGCATATAACAGTTTGTATCTTGCACCGCTTAGTGAAGATAAAATGATTAGCGTTATCGAAG
AAGCTCAAGCGAATACCAGTTCGGCGACACTGATTGAGGGACGTTTTCATAAAACCTCAGGGAACGGCAGCGTGGTTTAC
ATTGAAAAATCCGCTGATAAAAAGTTAGACAAAATCTTTGCAGCGCATTGGCCGGAAGATAGGAAACAAGCTCCATCAGT
ATTGACCGCCGCAGAGGGTTATCTTGAGTCTAAAAAAGATGGTACCTGGCTGACCTTAACAGATGGTCAGCGTTATGCCG
GCATTGTTGGACAACATGAGTTTGATCATAGTGAGTTTAAGACGTACGAAGTACATATCGCTAATAGAGAGGTGCAAAAG
CAGGTGCGTGGCGTTCAGGCCTTACCGACCGCTGCACTATTTTCTGTAGACAATCCTAAATATCAGGCAGAACTGCAGTG
GCGAATAGGTATTCCAGTATCAATATTATTAATGACTTTTATGGCTGTTCCATTAGCAAAAGTTAACCCGAGACAGGGAC
GTTATTCAAAGCTATTACCTGCCTTAGCATTATATTTAACCTTTTTCTTGCTGCTGAGTACGGCCAAGAGTCTGATTGAA
GATGGGTCTCTACCCGTTTTCAGTATCTGGATTGTACAAATCAGCTTTTTGCTGTTGGGCATTATATTACACCTGCAAAG
TTTAGGTAAATTTACCAAAGTGACTTTACGCAGGTGA

Upstream 100 bases:

>100_bases
AGTTTTTTTCAAGGGCCTTTGCTATTCGTCTAGCCCTCTTGAAAAAGTGATTTCAGCCCGTCAGCGCTTTCTCAGGATCA
TATTTACACAGGAGAACCGG

Downstream 100 bases:

>100_bases
TGGTTAAGGTATTTAAAACGGAATTACTATTATGGGTATTTTAGATCGTTACATAGGCAAAACAATTTTTGCAGCCACTT
TTTTGAGCCTGTTTGTATTG

Product: permease YjgP/YjgQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MILLRYLMLETFKSQIGILFVLVLIFVSQKFITILAQAINGVIPADLVMTLLYLNLPQLGTLMLPISFYLAVLFAHGRLH
GESEMIAMSSCGYSPNNVLKATLLLSFLTFAFAAYNSLYLAPLSEDKMISVIEEAQANTSSATLIEGRFHKTSGNGSVVY
IEKSADKKLDKIFAAHWPEDRKQAPSVLTAAEGYLESKKDGTWLTLTDGQRYAGIVGQHEFDHSEFKTYEVHIANREVQK
QVRGVQALPTAALFSVDNPKYQAELQWRIGIPVSILLMTFMAVPLAKVNPRQGRYSKLLPALALYLTFFLLLSTAKSLIE
DGSLPVFSIWIVQISFLLLGIILHLQSLGKFTKVTLRR

Sequences:

>Translated_358_residues
MILLRYLMLETFKSQIGILFVLVLIFVSQKFITILAQAINGVIPADLVMTLLYLNLPQLGTLMLPISFYLAVLFAHGRLH
GESEMIAMSSCGYSPNNVLKATLLLSFLTFAFAAYNSLYLAPLSEDKMISVIEEAQANTSSATLIEGRFHKTSGNGSVVY
IEKSADKKLDKIFAAHWPEDRKQAPSVLTAAEGYLESKKDGTWLTLTDGQRYAGIVGQHEFDHSEFKTYEVHIANREVQK
QVRGVQALPTAALFSVDNPKYQAELQWRIGIPVSILLMTFMAVPLAKVNPRQGRYSKLLPALALYLTFFLLLSTAKSLIE
DGSLPVFSIWIVQISFLLLGIILHLQSLGKFTKVTLRR
>Mature_358_residues
MILLRYLMLETFKSQIGILFVLVLIFVSQKFITILAQAINGVIPADLVMTLLYLNLPQLGTLMLPISFYLAVLFAHGRLH
GESEMIAMSSCGYSPNNVLKATLLLSFLTFAFAAYNSLYLAPLSEDKMISVIEEAQANTSSATLIEGRFHKTSGNGSVVY
IEKSADKKLDKIFAAHWPEDRKQAPSVLTAAEGYLESKKDGTWLTLTDGQRYAGIVGQHEFDHSEFKTYEVHIANREVQK
QVRGVQALPTAALFSVDNPKYQAELQWRIGIPVSILLMTFMAVPLAKVNPRQGRYSKLLPALALYLTFFLLLSTAKSLIE
DGSLPVFSIWIVQISFLLLGIILHLQSLGKFTKVTLRR

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=360, Percent_Identity=36.9444444444444, Blast_Score=201, Evalue=9e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 39907; Mature: 39907

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLRYLMLETFKSQIGILFVLVLIFVSQKFITILAQAINGVIPADLVMTLLYLNLPQLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH
TLMLPISFYLAVLFAHGRLHGESEMIAMSSCGYSPNNVLKATLLLSFLTFAFAAYNSLYL
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEE
APLSEDKMISVIEEAQANTSSATLIEGRFHKTSGNGSVVYIEKSADKKLDKIFAAHWPED
EECCCCHHHHHHHHHCCCCCCEEEEECEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCH
RKQAPSVLTAAEGYLESKKDGTWLTLTDGQRYAGIVGQHEFDHSEFKTYEVHIANREVQK
HHHCCHHHHHHHHHHCCCCCCCEEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCHHHHH
QVRGVQALPTAALFSVDNPKYQAELQWRIGIPVSILLMTFMAVPLAKVNPRQGRYSKLLP
HHHCHHHCCCHHEEECCCCCEEEEEEEEECCCHHHHHHHHHHCCHHCCCCCCCHHHHHHH
ALALYLTFFLLLSTAKSLIEDGSLPVFSIWIVQISFLLLGIILHLQSLGKFTKVTLRR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC
>Mature Secondary Structure
MILLRYLMLETFKSQIGILFVLVLIFVSQKFITILAQAINGVIPADLVMTLLYLNLPQLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH
TLMLPISFYLAVLFAHGRLHGESEMIAMSSCGYSPNNVLKATLLLSFLTFAFAAYNSLYL
HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEE
APLSEDKMISVIEEAQANTSSATLIEGRFHKTSGNGSVVYIEKSADKKLDKIFAAHWPED
EECCCCHHHHHHHHHCCCCCCEEEEECEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCH
RKQAPSVLTAAEGYLESKKDGTWLTLTDGQRYAGIVGQHEFDHSEFKTYEVHIANREVQK
HHHCCHHHHHHHHHHCCCCCCCEEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCHHHHH
QVRGVQALPTAALFSVDNPKYQAELQWRIGIPVSILLMTFMAVPLAKVNPRQGRYSKLLP
HHHCHHHCCCHHEEECCCCCEEEEEEEEECCCHHHHHHHHHHCCHHCCCCCCCHHHHHHH
ALALYLTFFLLLSTAKSLIEDGSLPVFSIWIVQISFLLLGIILHLQSLGKFTKVTLRR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]