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The map label for this gene is ycdL [C]

Identifier: 119900039

GI number: 119900039

Start: 4105616

End: 4106194

Strand: Direct

Name: ycdL [C]

Synonym: azo3750

Alternate gene names: 119900039

Gene position: 4105616-4106194 (Clockwise)

Preceding gene: 119900038

Following gene: 119900040

Centisome position: 93.82

GC content: 69.78

Gene sequence:

>579_bases
ATGTCCGCCCAGACCACCCGTAGCGCGCTCATCATCATCGACGTCCAGCAGTCCTTCCCCCATGCCCCCTACTGGCGCGA
AGACGATCTGCCCGCGTTCCGCAGCGCGCTGCTCGAACTGGAAGCCGGCTGCCGGGCGCGCGGCGTGCCGGTGGTACACA
TCTTCCACATCGCCCAGGGCCCCTTCGCCGCCGACAGCGGCCTGATCCACGCGCTGCCGTGGCTGCCGGAACCGGCCGAC
GCGGTGTTTCACAAGCACACCCACAACGCCTTCACCGACACCGGGCTCGACCTCTGGCTGCGCAGGCGCGGCATCGACCA
CCTGATCATCAGCGGTATCCGCACCGAACAGTGCTGCGAAACCACCGCGCGCGTCGGCAGCGACATCGGCTACCGCGTCG
ATTTCGTCACCGCGGCCACGCTCACCTTCCCGATGACCCACGCCGGCAGCGGCCGTACCTTCAGCGCGGAGGACATCAAG
ACCCGTACCGAGCTGGTGCTGGCCGGCCGTTTCGCCCGCATCGCCGGCGTCGAGGAGGTGCTGGCCGACCTCGACGCGCC
GCGCCGGCAGGCCGCCTGA

Upstream 100 bases:

>100_bases
ATGATGTCCGCAATGGTCCGCATCCTGTCCGGATCACCCCTGTCTGCCTCGGCTGGCAAGGCCGATGATGGCGCCACCTT
CAACCAGACGGAGTCCCGCA

Downstream 100 bases:

>100_bases
TCCCGACGCCATGCACACCGCCGCCCCGCTCGTCGTCCATTTCGCGCTGACGCCCAACTTCCTGCTGCTGGACTACGCCG
GGCCGGCGGAAGCCTTCCGC

Product: isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSAQTTRSALIIIDVQQSFPHAPYWREDDLPAFRSALLELEAGCRARGVPVVHIFHIAQGPFAADSGLIHALPWLPEPAD
AVFHKHTHNAFTDTGLDLWLRRRGIDHLIISGIRTEQCCETTARVGSDIGYRVDFVTAATLTFPMTHAGSGRTFSAEDIK
TRTELVLAGRFARIAGVEEVLADLDAPRRQAA

Sequences:

>Translated_192_residues
MSAQTTRSALIIIDVQQSFPHAPYWREDDLPAFRSALLELEAGCRARGVPVVHIFHIAQGPFAADSGLIHALPWLPEPAD
AVFHKHTHNAFTDTGLDLWLRRRGIDHLIISGIRTEQCCETTARVGSDIGYRVDFVTAATLTFPMTHAGSGRTFSAEDIK
TRTELVLAGRFARIAGVEEVLADLDAPRRQAA
>Mature_191_residues
SAQTTRSALIIIDVQQSFPHAPYWREDDLPAFRSALLELEAGCRARGVPVVHIFHIAQGPFAADSGLIHALPWLPEPADA
VFHKHTHNAFTDTGLDLWLRRRGIDHLIISGIRTEQCCETTARVGSDIGYRVDFVTAATLTFPMTHAGSGRTFSAEDIKT
RTELVLAGRFARIAGVEEVLADLDAPRRQAA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 21109; Mature: 20978

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQTTRSALIIIDVQQSFPHAPYWREDDLPAFRSALLELEAGCRARGVPVVHIFHIAQG
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCC
PFAADSGLIHALPWLPEPADAVFHKHTHNAFTDTGLDLWLRRRGIDHLIISGIRTEQCCE
CCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEECCCCCHHHHHH
TTARVGSDIGYRVDFVTAATLTFPMTHAGSGRTFSAEDIKTRTELVLAGRFARIAGVEEV
HHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
LADLDAPRRQAA
HHHCCCCCCCCC
>Mature Secondary Structure 
SAQTTRSALIIIDVQQSFPHAPYWREDDLPAFRSALLELEAGCRARGVPVVHIFHIAQG
CCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCC
PFAADSGLIHALPWLPEPADAVFHKHTHNAFTDTGLDLWLRRRGIDHLIISGIRTEQCCE
CCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEECCCCCHHHHHH
TTARVGSDIGYRVDFVTAATLTFPMTHAGSGRTFSAEDIKTRTELVLAGRFARIAGVEEV
HHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
LADLDAPRRQAA
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA