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The map label for this gene is xerC [H]

Identifier: 119854946

GI number: 119854946

Start: 60791

End: 61873

Strand: Reverse

Name: xerC [H]

Synonym: Mkms_5552

Alternate gene names: 119854946

Gene position: 61873-60791 (Counterclockwise)

Preceding gene: 119854947

Following gene: 119854945

Centisome position: 20.48

GC content: 62.7

Gene sequence:

>1083_bases
ATGTGGGTGGCGCTAGCTGCTGTACGAGATCTGCGCGGGCTTCGGCGCGAGGCGACGGCCGAGGAGTTGGCAGAGTTCGA
GACCGATGTCATGGCCGGCTTCGTGTTGGCTCGCGCAGCGGCGGGCATGGCCGACACCAGCATCGGCAATGACCTCGTTG
ACCTCGAGCAGATCCGCGAGTGGTTCGGCGCGCCGCTATGGCAGATGCAGCCCCGCCACGCGGACGAGTATCTGGGCAAG
GTTCTGCGGAACTCGGCGCCCGCAACTCGGCACGGGAAAGCGGGCACCCTGTCGCTGTTCTTCGACTACCTAGAGTTGCG
GCACAAGGCCGAGATCTACAACCTCACCGGCATCGTGGTCGAATGCCCAGTCGACGAGATGAATCGGCCGGCTAGCGGCC
CCGCCGCCTCGATCCGGATACCCCCGTCGGAAGCTGAGATCAACACGCTCTTCGCGGGATGGCGTAACGACTTGGTGCAG
TGCCGCAAGTTCGCACCCATGGCTAGGAGCTACGCCGCAGCACAACTGATGATGCGAATAGGGCTGCGTATCAACGAATG
TTGCTACCTGGATCTCGACGACATCAGGTGGGAACTCGGTCGCTTCGGAAAATTGCACGTGCGCCACGGAAAGGGCTCGC
GAGGACGGGGGCCCAAACAGCGCGTCGTTCCTTTAATCAACGGCGCCGACCGGACTCTGCGATGGTACGTCGAGGACGTC
TGGGGGCATTTCGGAGACGGATGGGACCAACCTGGAACGCCCTTGTTCCCCTCGGAACGCCACCACCCTGATGGATCCCA
CATCCGCGTTTCCCGGGAGCCGCTCCGGGCTGCGTTGAGCCAGGCAGTCGAACGGCATCTACCGCAGTGGAAGGGGCGAC
TCACTCCCCATGTGCTCCGCCATTACTGCGCCTCTGAGGTCTATCGCTCAGGCATGGACCTGGTTGCGATCCAAGAACTC
CTCGGTCATCAGTGGGTCGCCACCACGATGCGCTATGTGCACGTCCATCGAGAGCACATTGAAGACGCCTGGCTCAAGGG
GCAACAACGCGCCGCGAGTCGACTGGAAGGACTCTTACCATGA

Upstream 100 bases:

>100_bases
GTCGACGCGTACCGTTCCGTCCGCGATTGTGACCAAAATTCGGGAATTGTGACTCTTTTTGCACTATCCTGAATCTTCTG
CCGGAGCGGTGAAGTGAGGG

Downstream 100 bases:

>100_bases
TGAAGTGGAACTTGCGTCTCGCCGCGGCCAACCGCGGAATCTGGAAAGCCAGTGAGCTCCAACGACTTCTGCGTGACCAC
GGACTGGTCATCAGCGCAGG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MWVALAAVRDLRGLRREATAEELAEFETDVMAGFVLARAAAGMADTSIGNDLVDLEQIREWFGAPLWQMQPRHADEYLGK
VLRNSAPATRHGKAGTLSLFFDYLELRHKAEIYNLTGIVVECPVDEMNRPASGPAASIRIPPSEAEINTLFAGWRNDLVQ
CRKFAPMARSYAAAQLMMRIGLRINECCYLDLDDIRWELGRFGKLHVRHGKGSRGRGPKQRVVPLINGADRTLRWYVEDV
WGHFGDGWDQPGTPLFPSERHHPDGSHIRVSREPLRAALSQAVERHLPQWKGRLTPHVLRHYCASEVYRSGMDLVAIQEL
LGHQWVATTMRYVHVHREHIEDAWLKGQQRAASRLEGLLP

Sequences:

>Translated_360_residues
MWVALAAVRDLRGLRREATAEELAEFETDVMAGFVLARAAAGMADTSIGNDLVDLEQIREWFGAPLWQMQPRHADEYLGK
VLRNSAPATRHGKAGTLSLFFDYLELRHKAEIYNLTGIVVECPVDEMNRPASGPAASIRIPPSEAEINTLFAGWRNDLVQ
CRKFAPMARSYAAAQLMMRIGLRINECCYLDLDDIRWELGRFGKLHVRHGKGSRGRGPKQRVVPLINGADRTLRWYVEDV
WGHFGDGWDQPGTPLFPSERHHPDGSHIRVSREPLRAALSQAVERHLPQWKGRLTPHVLRHYCASEVYRSGMDLVAIQEL
LGHQWVATTMRYVHVHREHIEDAWLKGQQRAASRLEGLLP
>Mature_360_residues
MWVALAAVRDLRGLRREATAEELAEFETDVMAGFVLARAAAGMADTSIGNDLVDLEQIREWFGAPLWQMQPRHADEYLGK
VLRNSAPATRHGKAGTLSLFFDYLELRHKAEIYNLTGIVVECPVDEMNRPASGPAASIRIPPSEAEINTLFAGWRNDLVQ
CRKFAPMARSYAAAQLMMRIGLRINECCYLDLDDIRWELGRFGKLHVRHGKGSRGRGPKQRVVPLINGADRTLRWYVEDV
WGHFGDGWDQPGTPLFPSERHHPDGSHIRVSREPLRAALSQAVERHLPQWKGRLTPHVLRHYCASEVYRSGMDLVAIQEL
LGHQWVATTMRYVHVHREHIEDAWLKGQQRAASRLEGLLP

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40839; Mature: 40839

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWVALAAVRDLRGLRREATAEELAEFETDVMAGFVLARAAAGMADTSIGNDLVDLEQIRE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
WFGAPLWQMQPRHADEYLGKVLRNSAPATRHGKAGTLSLFFDYLELRHKAEIYNLTGIVV
HHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECEEEE
ECPVDEMNRPASGPAASIRIPPSEAEINTLFAGWRNDLVQCRKFAPMARSYAAAQLMMRI
ECCHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLRINECCYLDLDDIRWELGRFGKLHVRHGKGSRGRGPKQRVVPLINGADRTLRWYVEDV
CCCCCCEEECCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCHHCCCCCHHHHHHHHHH
WGHFGDGWDQPGTPLFPSERHHPDGSHIRVSREPLRAALSQAVERHLPQWKGRLTPHVLR
HHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCHHHCCCCCHHHHH
HYCASEVYRSGMDLVAIQELLGHQWVATTMRYVHVHREHIEDAWLKGQQRAASRLEGLLP
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MWVALAAVRDLRGLRREATAEELAEFETDVMAGFVLARAAAGMADTSIGNDLVDLEQIRE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
WFGAPLWQMQPRHADEYLGKVLRNSAPATRHGKAGTLSLFFDYLELRHKAEIYNLTGIVV
HHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECEEEE
ECPVDEMNRPASGPAASIRIPPSEAEINTLFAGWRNDLVQCRKFAPMARSYAAAQLMMRI
ECCHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLRINECCYLDLDDIRWELGRFGKLHVRHGKGSRGRGPKQRVVPLINGADRTLRWYVEDV
CCCCCCEEECCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCHHCCCCCHHHHHHHHHH
WGHFGDGWDQPGTPLFPSERHHPDGSHIRVSREPLRAALSQAVERHLPQWKGRLTPHVLR
HHHCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCHHHCCCCCHHHHH
HYCASEVYRSGMDLVAIQELLGHQWVATTMRYVHVHREHIEDAWLKGQQRAASRLEGLLP
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]