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The map label for this gene is yraN [C]

Identifier: 119776487

GI number: 119776487

Start: 3984026

End: 3984352

Strand: Direct

Name: yraN [C]

Synonym: Sama_3355

Alternate gene names: 119776487

Gene position: 3984026-3984352 (Clockwise)

Preceding gene: 119776486

Following gene: 119776488

Centisome position: 92.52

GC content: 54.13

Gene sequence:

>327_bases
GTGAACCCGGGCCAGCTCGCTGAAGACAGAGCAATGAAGCACCTGTGCGCCCATGGGCTGAGGCTCGAGGCGCGCAATGT
GCGTTACCCCTTTGGCGAGATTGATTTAGTAATGCGGGAAGGGCGCGTGTACGTGTTTGTGGAAGTCAAATTCCGTACCC
CAAAAGGTTTTGGTGATGCGGTGCAGGCGTTATCTGCCGCACAGCAGCAAAGACTCAGGCGTGCGGCCACCCATTACCTT
CAGTGCCATCGTATCGATGCCCCCTGCAGGTTCGATATGGTGGCCATTACAGGGGATAAATTGGAATGGATTAAAGATGC
ATTTTGA

Upstream 100 bases:

>100_bases
AGTTCCAGGGACGTGGCGGCGTACTGTCGGTGACCCACGACGGACTCATCAAGCGTCAGCTCTCCTGGGGCAAAATCCAG
CGCGGTGTATTGAGGCCTCT

Downstream 100 bases:

>100_bases
TACCAAGCCACCCGCCACATCCGTGCACAACAATTTCACCCCCTGCCCTCTACTCGCGCGCCGCTTTGTGGCATGATAGC
GGCAGTTTATTTTGTAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MNPGQLAEDRAMKHLCAHGLRLEARNVRYPFGEIDLVMREGRVYVFVEVKFRTPKGFGDAVQALSAAQQQRLRRAATHYL
QCHRIDAPCRFDMVAITGDKLEWIKDAF

Sequences:

>Translated_108_residues
MNPGQLAEDRAMKHLCAHGLRLEARNVRYPFGEIDLVMREGRVYVFVEVKFRTPKGFGDAVQALSAAQQQRLRRAATHYL
QCHRIDAPCRFDMVAITGDKLEWIKDAF
>Mature_108_residues
MNPGQLAEDRAMKHLCAHGLRLEARNVRYPFGEIDLVMREGRVYVFVEVKFRTPKGFGDAVQALSAAQQQRLRRAATHYL
QCHRIDAPCRFDMVAITGDKLEWIKDAF

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=109, Percent_Identity=43.1192660550459, Blast_Score=89, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3355_SHEAM (A1SB01)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_929227.1
- ProteinModelPortal:   A1SB01
- STRING:   A1SB01
- GeneID:   4605602
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_3355
- NMPDR:   fig|326297.7.peg.3158
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   EVRQRKN
- PhylomeDB:   A1SB01
- ProtClustDB:   PRK12497
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 12419; Mature: 12419

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPGQLAEDRAMKHLCAHGLRLEARNVRYPFGEIDLVMREGRVYVFVEVKFRTPKGFGDA
CCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCCHHH
VQALSAAQQQRLRRAATHYLQCHRIDAPCRFDMVAITGDKLEWIKDAF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHCCC
>Mature Secondary Structure
MNPGQLAEDRAMKHLCAHGLRLEARNVRYPFGEIDLVMREGRVYVFVEVKFRTPKGFGDA
CCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCCHHH
VQALSAAQQQRLRRAATHYLQCHRIDAPCRFDMVAITGDKLEWIKDAF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA