| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is tyrP [H]
Identifier: 119776071
GI number: 119776071
Start: 3493528
End: 3494715
Strand: Reverse
Name: tyrP [H]
Synonym: Sama_2939
Alternate gene names: 119776071
Gene position: 3494715-3493528 (Counterclockwise)
Preceding gene: 119776073
Following gene: 119776070
Centisome position: 81.16
GC content: 57.41
Gene sequence:
>1188_bases GTGAATTTGAAAACACTTGGCTCTATCGCCATTGTGGCGGGTACCGCCATTGGGGCCGGCATGTTGGCGTTGCCGCTGGC GACCGCCGCCCTTGGGGTGATCCCCGCGCTGTTATTGCTGCTGGTCGTGTGGGCCATTTCGGCATATACCTCCCTCCTTA TGCTCGAAATTAACCTGCGCAGTGGCGTGGGTGACAATGTGCACGCCATCACCGGCAAGACACTGGGCAAAAAGGGGCAG CTTATCCAGGGCGCCTCTTTCCTGAGTTTACTGTATGCCCTGACGGCTGCCTATCTGACCGGCGGCTCCTCCTTGCTGGT ACACCGCATGGAGTCGGTATTTTCCATCAATCTCGATGGTCAGCTGGCGGTACTGCTTTTTACGCTGGTGCTTGGCAGCG TGGCCGCATTGGGTGTGAGCTGGGTGGATAAGCTCTCCCGCTTGCTGTTCAGCTTGATGGTGGTGCTCCTGGTGCTGGTG GTGGGCTTCCTGTTGCCTGAAATCCGCCCCTCTGTGATTGCCGCCGATGCCTTCGAAAAAGTGTCGGCCAATGCCTGGAT GGCTGCTATTCCCGTCGTATTTACGTCTTTTGGTTTCCATGTGTGTATTGCCACATTGGTGCGCTACCTCGACGGTGATG CGGTTAACCTGCGCAAGGTGCTGCTGATTGGCTCGACCATCCCACTGGTGTGTTACATCCTGTGGCTGCTGGTGACCCTG GGAACCGTGGGTGGAGATGAAATTGCCACCTTCAACGGCGCCCTGCCCAAGCTTATCAGCGCCCTTCAGGAGCTGGCGGC ACACCCCGTAGTGGGTCAGAGCATTGCGGTGTTTGCCGATCTGGCGCTGGTGACCTCCTTCCTTGGAGTAACCATGAGCC TGTTTGATTTTCTGGCCGAAATGACCCGCTCAAAAGGCGGTATCGGTGGCCGTTTGCAGACCTGGATTATCACCTTTTTA CCACCACTGCTGTGTGCGCTCTTTGTGCCCGAAGGCTTTGTGGCCGTGCTGGGTTTTGCCGCCATTCCGCTGGTGTTTAT GATCATTTTCCTGCCGATTGCCATGGCACTGAATCAGCGTGCACAGTACCGGGACGGTTATCAGGTCAGCGGCGGCAAGC TGGCCTTGTCGCTGATTGGTGTCGCAGGGGTGGCGATTATTGCCGCCCAGCTGTGGGTGGCACTGTAA
Upstream 100 bases:
>100_bases GCGGGTGCGTCCTCTCAAGGCGATGGCCTTTCGGCAGTTCTAAAAATTGGCTCATACCTATAACTACAAATGATTTATCA GACTTGAACAGGACAGTTCC
Downstream 100 bases:
>100_bases AAAGCCTTTTGTAACGGAAGTTTGCCAAGGCTGTGACAGCTTGTAACCCTGTGGTAAAGTCGGGTCTTCGCGCCCGGCTT TTTTGTACCCGCCGTTTGGG
Product: tyrosine-specific transport protein
Products: Proton [Cytoplasm]; L-tyrosine [Cytoplasm] [C]
Alternate protein names: Tyrosine permease [H]
Number of amino acids: Translated: 395; Mature: 395
Protein sequence:
>395_residues MNLKTLGSIAIVAGTAIGAGMLALPLATAALGVIPALLLLLVVWAISAYTSLLMLEINLRSGVGDNVHAITGKTLGKKGQ LIQGASFLSLLYALTAAYLTGGSSLLVHRMESVFSINLDGQLAVLLFTLVLGSVAALGVSWVDKLSRLLFSLMVVLLVLV VGFLLPEIRPSVIAADAFEKVSANAWMAAIPVVFTSFGFHVCIATLVRYLDGDAVNLRKVLLIGSTIPLVCYILWLLVTL GTVGGDEIATFNGALPKLISALQELAAHPVVGQSIAVFADLALVTSFLGVTMSLFDFLAEMTRSKGGIGGRLQTWIITFL PPLLCALFVPEGFVAVLGFAAIPLVFMIIFLPIAMALNQRAQYRDGYQVSGGKLALSLIGVAGVAIIAAQLWVAL
Sequences:
>Translated_395_residues MNLKTLGSIAIVAGTAIGAGMLALPLATAALGVIPALLLLLVVWAISAYTSLLMLEINLRSGVGDNVHAITGKTLGKKGQ LIQGASFLSLLYALTAAYLTGGSSLLVHRMESVFSINLDGQLAVLLFTLVLGSVAALGVSWVDKLSRLLFSLMVVLLVLV VGFLLPEIRPSVIAADAFEKVSANAWMAAIPVVFTSFGFHVCIATLVRYLDGDAVNLRKVLLIGSTIPLVCYILWLLVTL GTVGGDEIATFNGALPKLISALQELAAHPVVGQSIAVFADLALVTSFLGVTMSLFDFLAEMTRSKGGIGGRLQTWIITFL PPLLCALFVPEGFVAVLGFAAIPLVFMIIFLPIAMALNQRAQYRDGYQVSGGKLALSLIGVAGVAIIAAQLWVAL >Mature_395_residues MNLKTLGSIAIVAGTAIGAGMLALPLATAALGVIPALLLLLVVWAISAYTSLLMLEINLRSGVGDNVHAITGKTLGKKGQ LIQGASFLSLLYALTAAYLTGGSSLLVHRMESVFSINLDGQLAVLLFTLVLGSVAALGVSWVDKLSRLLFSLMVVLLVLV VGFLLPEIRPSVIAADAFEKVSANAWMAAIPVVFTSFGFHVCIATLVRYLDGDAVNLRKVLLIGSTIPLVCYILWLLVTL GTVGGDEIATFNGALPKLISALQELAAHPVVGQSIAVFADLALVTSFLGVTMSLFDFLAEMTRSKGGIGGRLQTWIITFL PPLLCALFVPEGFVAVLGFAAIPLVFMIIFLPIAMALNQRAQYRDGYQVSGGKLALSLIGVAGVAIIAAQLWVAL
Specific function: Involved in transporting tyrosine across the cytoplasmic membrane [H]
COG id: COG0814
COG function: function code E; Amino acid permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid/polyamine transporter 2 family. Mtr/TnaB/TyrP permease subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788218, Length=401, Percent_Identity=42.643391521197, Blast_Score=281, Evalue=6e-77, Organism=Escherichia coli, GI1790145, Length=387, Percent_Identity=27.6485788113695, Blast_Score=159, Evalue=3e-40, Organism=Escherichia coli, GI1789552, Length=373, Percent_Identity=29.4906166219839, Blast_Score=154, Evalue=7e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002091 - InterPro: IPR013061 - InterPro: IPR013059 - InterPro: IPR018227 [H]
Pfam domain/function: PF03222 Trp_Tyr_perm [H]
EC number: NA
Molecular weight: Translated: 41445; Mature: 41445
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS00867 CPSASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLKTLGSIAIVAGTAIGAGMLALPLATAALGVIPALLLLLVVWAISAYTSLLMLEINLR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC SGVGDNVHAITGKTLGKKGQLIQGASFLSLLYALTAAYLTGGSSLLVHRMESVFSINLDG CCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCC QLAVLLFTLVLGSVAALGVSWVDKLSRLLFSLMVVLLVLVVGFLLPEIRPSVIAADAFEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH VSANAWMAAIPVVFTSFGFHVCIATLVRYLDGDAVNLRKVLLIGSTIPLVCYILWLLVTL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH GTVGGDEIATFNGALPKLISALQELAAHPVVGQSIAVFADLALVTSFLGVTMSLFDFLAE CCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MTRSKGGIGGRLQTWIITFLPPLLCALFVPEGFVAVLGFAAIPLVFMIIFLPIAMALNQR HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQYRDGYQVSGGKLALSLIGVAGVAIIAAQLWVAL HHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNLKTLGSIAIVAGTAIGAGMLALPLATAALGVIPALLLLLVVWAISAYTSLLMLEINLR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC SGVGDNVHAITGKTLGKKGQLIQGASFLSLLYALTAAYLTGGSSLLVHRMESVFSINLDG CCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCC QLAVLLFTLVLGSVAALGVSWVDKLSRLLFSLMVVLLVLVVGFLLPEIRPSVIAADAFEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH VSANAWMAAIPVVFTSFGFHVCIATLVRYLDGDAVNLRKVLLIGSTIPLVCYILWLLVTL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH GTVGGDEIATFNGALPKLISALQELAAHPVVGQSIAVFADLALVTSFLGVTMSLFDFLAE CCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MTRSKGGIGGRLQTWIITFLPPLLCALFVPEGFVAVLGFAAIPLVFMIIFLPIAMALNQR HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQYRDGYQVSGGKLALSLIGVAGVAIIAAQLWVAL HHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; L-tyrosine [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-tyrosine [Periplasm] = Proton [Cytoplasm] + L-tyrosine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3049553; 9097040; 9278503 [H]