Click here to switch to the map view.

The map label for this gene is ybjY [C]

Identifier: 119775997

GI number: 119775997

Start: 3403659

End: 3404915

Strand: Reverse

Name: ybjY [C]

Synonym: Sama_2865

Alternate gene names: 119775997

Gene position: 3404915-3403659 (Counterclockwise)

Preceding gene: 119775998

Following gene: 119775996

Centisome position: 79.07

GC content: 58.15

Gene sequence:

>1257_bases
ATGATCAGGGATACCAGCGGACAGGACAGAATTGTGGCCCCAAACAAGTACCGTCGTATCGGATGGATTGCAGGCGGGGT
GGCGCTGTTTGCCATCGCGGCTGCTTGGGCCATGGGCAACAGCGGCATTTCTGCCGGACACTCAGTTAAACGCAGTGATA
TGGTGACCGCGACCATCACCCGCGGCACTTTGGTGCGCGACATTGTCTCCAACGGTAAAATCGTGGCCGCCAATGCGCCC
ATCATGTATGCCAGTGCCGAAGGCATGGTAACCCTGTTGGCAAAACCCGGTGACACTGTGTCCGTGGGCCAGGCACTGGC
TACCATCGACAGCCCCTTGCTCACCAACGCGCTGGCGCAGGAACAGGCACGTCTGGCCGGGCTGGAGGGGGAAGTTGAGC
GCGCCACCTTAAGCGCCCGCCGTGAGCAGCTCAGTGCCCGTCAGGTACTGGACACCGCCCGGGTTGAACTCGAAGCCGCC
GAGCGTGAAAGTCGCCGCGGCGATCTGCTTATCGCCAAAGAACTCATCAGCCGTATCGATTTTGAAAAGGTAAAAGACGA
CTACAAAAAAGCCCAGCTGCGCTTTGACCACGCCGAACAGGAAGTGGCGCTGATGGCCGACACCCAGGCATTCGAGCTTA
AAAACAAGGCATTGGAGCTCAAACGGCAACAGCTGGTGGTGGATGACCTGCGTCGTCAGGTGGCGGCTCTGGAGGTTACT
GCGCCGGTGGATGGCATTATCGGCAACTGGCTTACCGAACAAAAAGCCCGCTTAAGCCGCGGTCAGGCGATCCTGACTGT
GGTGGACCTGAGTGCCTTTGAAGCCGAGCTGGCCGTGTCTGAATCCTATGCCGACGAGCTGGGGCTCGGCATGGCGGTGG
AGTTGGACTTGGGCGGGGTGAAAACCACAGGAACCCTGGCTTCCATCTCACCCGAGGTGAGCCGAGGCGAAGTACTCACA
CGGGTACGTTTTGATAACGTTGATGGGCTAAAACTCAGACAAAACCAGCGGCTCAGCGCCCGTATCCTTCTGGAAAATTT
AGAAAATGTACTGATGGTGCGCCGTGGCAGTTTCGTCAGTGACGGCGGTAACCATGTCTATTGTATCAAAGGCGATATCG
CCAGCCGCACCCCCATCAAGCTTGGCGCCCGCAGCGTCAGCCACGTGCAGGTGCTTGAAGGTGGAGAGGCCGGTGATGAG
TGGATTATCTCCGGCAGTGACAAGATGAAGCAGGCCGAACATGTCAGCCTCTATTGA

Upstream 100 bases:

>100_bases
TTGAAATAAAAGAAAAATAAATTCTGGCACGCTATTTGTTTTACTCCCAGCATCTTACGTTTCATTACCCAGGACCGGAC
ACACCGGTGAAGGACAAGGC

Downstream 100 bases:

>100_bases
GCCATCTGAAATGAAACAAAGACGCCTCGGTTGGATGATTGCACTGCTGATGTTGGCCCTTGCCATGGCCTCACAGTGGC
TTGCCACCAACCCTGCGCTG

Product: HlyD family secretion protein

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; ABC Transporter Permease; HlyD Family Secretion Protein; Efflux Transporter Rnd Family Mfp Subunit; Efflux Transporter MFP Component RND Family; Secretion Protein HlyD; Efflux Transporter MFP Component RND Family Protein; Membrane-Fusion Protein; Membrane Fusion Protein; ABC Transporter Permease Protein; Efflux Transporter; HlyD Family Transporter Protein; HlyD Family Transporter

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MIRDTSGQDRIVAPNKYRRIGWIAGGVALFAIAAAWAMGNSGISAGHSVKRSDMVTATITRGTLVRDIVSNGKIVAANAP
IMYASAEGMVTLLAKPGDTVSVGQALATIDSPLLTNALAQEQARLAGLEGEVERATLSARREQLSARQVLDTARVELEAA
ERESRRGDLLIAKELISRIDFEKVKDDYKKAQLRFDHAEQEVALMADTQAFELKNKALELKRQQLVVDDLRRQVAALEVT
APVDGIIGNWLTEQKARLSRGQAILTVVDLSAFEAELAVSESYADELGLGMAVELDLGGVKTTGTLASISPEVSRGEVLT
RVRFDNVDGLKLRQNQRLSARILLENLENVLMVRRGSFVSDGGNHVYCIKGDIASRTPIKLGARSVSHVQVLEGGEAGDE
WIISGSDKMKQAEHVSLY

Sequences:

>Translated_418_residues
MIRDTSGQDRIVAPNKYRRIGWIAGGVALFAIAAAWAMGNSGISAGHSVKRSDMVTATITRGTLVRDIVSNGKIVAANAP
IMYASAEGMVTLLAKPGDTVSVGQALATIDSPLLTNALAQEQARLAGLEGEVERATLSARREQLSARQVLDTARVELEAA
ERESRRGDLLIAKELISRIDFEKVKDDYKKAQLRFDHAEQEVALMADTQAFELKNKALELKRQQLVVDDLRRQVAALEVT
APVDGIIGNWLTEQKARLSRGQAILTVVDLSAFEAELAVSESYADELGLGMAVELDLGGVKTTGTLASISPEVSRGEVLT
RVRFDNVDGLKLRQNQRLSARILLENLENVLMVRRGSFVSDGGNHVYCIKGDIASRTPIKLGARSVSHVQVLEGGEAGDE
WIISGSDKMKQAEHVSLY
>Mature_418_residues
MIRDTSGQDRIVAPNKYRRIGWIAGGVALFAIAAAWAMGNSGISAGHSVKRSDMVTATITRGTLVRDIVSNGKIVAANAP
IMYASAEGMVTLLAKPGDTVSVGQALATIDSPLLTNALAQEQARLAGLEGEVERATLSARREQLSARQVLDTARVELEAA
ERESRRGDLLIAKELISRIDFEKVKDDYKKAQLRFDHAEQEVALMADTQAFELKNKALELKRQQLVVDDLRRQVAALEVT
APVDGIIGNWLTEQKARLSRGQAILTVVDLSAFEAELAVSESYADELGLGMAVELDLGGVKTTGTLASISPEVSRGEVLT
RVRFDNVDGLKLRQNQRLSARILLENLENVLMVRRGSFVSDGGNHVYCIKGDIASRTPIKLGARSVSHVQVLEGGEAGDE
WIISGSDKMKQAEHVSLY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45268; Mature: 45268

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRDTSGQDRIVAPNKYRRIGWIAGGVALFAIAAAWAMGNSGISAGHSVKRSDMVTATIT
CCCCCCCCCEEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC
RGTLVRDIVSNGKIVAANAPIMYASAEGMVTLLAKPGDTVSVGQALATIDSPLLTNALAQ
CCHHHHHHHCCCEEEEECCCEEEEECCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
EQARLAGLEGEVERATLSARREQLSARQVLDTARVELEAAERESRRGDLLIAKELISRID
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCC
FEKVKDDYKKAQLRFDHAEQEVALMADTQAFELKNKALELKRQQLVVDDLRRQVAALEVT
HHHHHHHHHHHHHEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
APVDGIIGNWLTEQKARLSRGQAILTVVDLSAFEAELAVSESYADELGLGMAVELDLGGV
CCHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
KTTGTLASISPEVSRGEVLTRVRFDNVDGLKLRQNQRLSARILLENLENVLMVRRGSFVS
CCCCCCEECCCCCCCCCEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHEECCCCEEC
DGGNHVYCIKGDIASRTPIKLGARSVSHVQVLEGGEAGDEWIISGSDKMKQAEHVSLY
CCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCHHHHHCCCCCCC
>Mature Secondary Structure
MIRDTSGQDRIVAPNKYRRIGWIAGGVALFAIAAAWAMGNSGISAGHSVKRSDMVTATIT
CCCCCCCCCEEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC
RGTLVRDIVSNGKIVAANAPIMYASAEGMVTLLAKPGDTVSVGQALATIDSPLLTNALAQ
CCHHHHHHHCCCEEEEECCCEEEEECCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
EQARLAGLEGEVERATLSARREQLSARQVLDTARVELEAAERESRRGDLLIAKELISRID
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCC
FEKVKDDYKKAQLRFDHAEQEVALMADTQAFELKNKALELKRQQLVVDDLRRQVAALEVT
HHHHHHHHHHHHHEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
APVDGIIGNWLTEQKARLSRGQAILTVVDLSAFEAELAVSESYADELGLGMAVELDLGGV
CCHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
KTTGTLASISPEVSRGEVLTRVRFDNVDGLKLRQNQRLSARILLENLENVLMVRRGSFVS
CCCCCCEECCCCCCCCCEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHEECCCCEEC
DGGNHVYCIKGDIASRTPIKLGARSVSHVQVLEGGEAGDEWIISGSDKMKQAEHVSLY
CCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA