Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119775986

Identifier: 119775986

GI number: 119775986

Start: 3392979

End: 3393362

Strand: Reverse

Name: 119775986

Synonym: Sama_2854

Alternate gene names: NA

Gene position: 3393362-3392979 (Counterclockwise)

Preceding gene: 119775989

Following gene: 119775985

Centisome position: 78.8

GC content: 55.99

Gene sequence:

>384_bases
ATGACAGTACTCAGACATGGTTTAACCATAGGGGTTGAGCGTCACGGAAAGGATGATTTCTTTGTGGTGCTCAAGGTCAC
TGGCACACTCACCCATGAGGATTATGAGCGCATGGTGCCTGTGCTGGAAGGCGCCATCGCGGGTGTCAGCGACCCCGATA
TTTATATGCTGGTGGACGCCACCGAGCTGGATGGTTGGGAGGCGAGGGCGATGTGGGATGATCTGAAACTGGGCATCAGG
CATGGCCGTCACTTCGAAAAAATCGCCGTGTTCGGCAGACCGGGCTGGCAGGAGTGGATGACCAAGTTGGCAGATTGGTT
TACCCCGGCCGATGCCCGATTTTTTGTCGACCGGCAAGATGCCCTTGAGTGGTTGGGCGACTGA

Upstream 100 bases:

>100_bases
GATTTTGACAATGCCTTCGGGAAAACTTGATCTGGATCACGAGTATCTCTCCCCCCGGGTGCCTACAATTACTGTAGGCG
AAGTAGCAGGGAGCATGGAG

Downstream 100 bases:

>100_bases
ACACCAAAGGATAGCCCTGATAACGGAAAGTATTTTGGGAGGTAGATATGGTTAACAAAACAATACTGTGGCCCACTGAC
TTTACTGAAACGGCCTCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MTVLRHGLTIGVERHGKDDFFVVLKVTGTLTHEDYERMVPVLEGAIAGVSDPDIYMLVDATELDGWEARAMWDDLKLGIR
HGRHFEKIAVFGRPGWQEWMTKLADWFTPADARFFVDRQDALEWLGD

Sequences:

>Translated_127_residues
MTVLRHGLTIGVERHGKDDFFVVLKVTGTLTHEDYERMVPVLEGAIAGVSDPDIYMLVDATELDGWEARAMWDDLKLGIR
HGRHFEKIAVFGRPGWQEWMTKLADWFTPADARFFVDRQDALEWLGD
>Mature_126_residues
TVLRHGLTIGVERHGKDDFFVVLKVTGTLTHEDYERMVPVLEGAIAGVSDPDIYMLVDATELDGWEARAMWDDLKLGIRH
GRHFEKIAVFGRPGWQEWMTKLADWFTPADARFFVDRQDALEWLGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14604; Mature: 14473

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLRHGLTIGVERHGKDDFFVVLKVTGTLTHEDYERMVPVLEGAIAGVSDPDIYMLVDA
CCEECCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
TELDGWEARAMWDDLKLGIRHGRHFEKIAVFGRPGWQEWMTKLADWFTPADARFFVDRQD
CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEHHH
ALEWLGD
HHHHHCC
>Mature Secondary Structure 
TVLRHGLTIGVERHGKDDFFVVLKVTGTLTHEDYERMVPVLEGAIAGVSDPDIYMLVDA
CEECCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
TELDGWEARAMWDDLKLGIRHGRHFEKIAVFGRPGWQEWMTKLADWFTPADARFFVDRQD
CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEHHH
ALEWLGD
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA