| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775986
Identifier: 119775986
GI number: 119775986
Start: 3392979
End: 3393362
Strand: Reverse
Name: 119775986
Synonym: Sama_2854
Alternate gene names: NA
Gene position: 3393362-3392979 (Counterclockwise)
Preceding gene: 119775989
Following gene: 119775985
Centisome position: 78.8
GC content: 55.99
Gene sequence:
>384_bases ATGACAGTACTCAGACATGGTTTAACCATAGGGGTTGAGCGTCACGGAAAGGATGATTTCTTTGTGGTGCTCAAGGTCAC TGGCACACTCACCCATGAGGATTATGAGCGCATGGTGCCTGTGCTGGAAGGCGCCATCGCGGGTGTCAGCGACCCCGATA TTTATATGCTGGTGGACGCCACCGAGCTGGATGGTTGGGAGGCGAGGGCGATGTGGGATGATCTGAAACTGGGCATCAGG CATGGCCGTCACTTCGAAAAAATCGCCGTGTTCGGCAGACCGGGCTGGCAGGAGTGGATGACCAAGTTGGCAGATTGGTT TACCCCGGCCGATGCCCGATTTTTTGTCGACCGGCAAGATGCCCTTGAGTGGTTGGGCGACTGA
Upstream 100 bases:
>100_bases GATTTTGACAATGCCTTCGGGAAAACTTGATCTGGATCACGAGTATCTCTCCCCCCGGGTGCCTACAATTACTGTAGGCG AAGTAGCAGGGAGCATGGAG
Downstream 100 bases:
>100_bases ACACCAAAGGATAGCCCTGATAACGGAAAGTATTTTGGGAGGTAGATATGGTTAACAAAACAATACTGTGGCCCACTGAC TTTACTGAAACGGCCTCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MTVLRHGLTIGVERHGKDDFFVVLKVTGTLTHEDYERMVPVLEGAIAGVSDPDIYMLVDATELDGWEARAMWDDLKLGIR HGRHFEKIAVFGRPGWQEWMTKLADWFTPADARFFVDRQDALEWLGD
Sequences:
>Translated_127_residues MTVLRHGLTIGVERHGKDDFFVVLKVTGTLTHEDYERMVPVLEGAIAGVSDPDIYMLVDATELDGWEARAMWDDLKLGIR HGRHFEKIAVFGRPGWQEWMTKLADWFTPADARFFVDRQDALEWLGD >Mature_126_residues TVLRHGLTIGVERHGKDDFFVVLKVTGTLTHEDYERMVPVLEGAIAGVSDPDIYMLVDATELDGWEARAMWDDLKLGIRH GRHFEKIAVFGRPGWQEWMTKLADWFTPADARFFVDRQDALEWLGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14604; Mature: 14473
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVLRHGLTIGVERHGKDDFFVVLKVTGTLTHEDYERMVPVLEGAIAGVSDPDIYMLVDA CCEECCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC TELDGWEARAMWDDLKLGIRHGRHFEKIAVFGRPGWQEWMTKLADWFTPADARFFVDRQD CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEHHH ALEWLGD HHHHHCC >Mature Secondary Structure TVLRHGLTIGVERHGKDDFFVVLKVTGTLTHEDYERMVPVLEGAIAGVSDPDIYMLVDA CEECCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC TELDGWEARAMWDDLKLGIRHGRHFEKIAVFGRPGWQEWMTKLADWFTPADARFFVDRQD CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEHHH ALEWLGD HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA