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The map label for this gene is yhaJ [H]

Identifier: 119775981

GI number: 119775981

Start: 3388513

End: 3389403

Strand: Reverse

Name: yhaJ [H]

Synonym: Sama_2849

Alternate gene names: 119775981

Gene position: 3389403-3388513 (Counterclockwise)

Preceding gene: 119775984

Following gene: 119775980

Centisome position: 78.71

GC content: 61.5

Gene sequence:

>891_bases
ATGCCCTCTGTTTTTCAGCTTCAGGCCCTGTGCGCCGCCGTGGAGAAGCCGTCACTGCGTCAGGCCGCCGAGGCACTGTG
CAAGACCCAGCCCGCCTTGACCCATGCCCTCAAGCAGCTCGAGTCGCAGTTGGGGTTGCCCCTGTTTAATCGTGATGGCT
ACCGCCTTGTGCTCACCGGCAGCGGCGAGCGCATTTATCAGCTGGCGCTGAAAACCCTGGAGAGCCACGCTGAGCTTGAG
CAGCTGGCGCAGCATTTGGCCAGAGGGGACGAAGACCGGGTGGTACTGACGGTGGAGGCCTCATTCGACCTTACGCCTAT
CCTAAGTGCGCTGGAGTCGGTACAGGCCGAGTTTTCACAAACCGAAATCGTTATTCAACAGGAATACCTCACAGGTGCGG
TTGAGCGGGTGCAGCAGGGACATGCCAATCTTGCCATTACACCGCTGGCACCGGCGCTGAGTCCGGGTACCCGGCTCGAT
ACCCAGCCTCTGAGTCAGGGGCAGATGCTCAATGTGGCCGCCCCTAGGCTGCTTGCCCGCTATCCGTCGCTCTGCAGCAT
ACTTGAGCTGCGAAAAGAGTATCAAATCCTGGTGCAGGATTCGGGCAGCGGCACCCTCGGGCTCAAACTTGGCGTGCAAT
CCGCCCAGCGCCACTGGTATGTCAACAGCTTTGCCACCAAGCTCTCCTTGATTGAACAGGGGATGGGCTGGGGGCGCCTG
CCCGAATGGATGCTGACAGAGGCCCTGGCCGCAGGGCGACTTCAGCTGCTGGAGCTGGCCGATTTTCCCGCGCGGCAGCG
ATTTGATTATCATCTGGTTCGCCGAAGCGCCTCAGTGCCCGGCCCGGTAGCGACCAGGCTTTGGCAGCGCCTTGGCGGCG
GCGCGCTTTAA

Upstream 100 bases:

>100_bases
GTAAACCCTGAGTCAATAAGAGAGGGTCTAAGTATTCTTCAGTCAAAAAATTAAATATATTGATTATCTTTTATTAAGAT
GATTCGCAGGATTTATCTTT

Downstream 100 bases:

>100_bases
TCCTGTTTTAATCCTTGTCCTGCTACCATGGCCGACTTTCGGATTGGCCCTGAGCCGGTTCTGCATTTGCAAGGGATTCA
AGCATGTTTAAAAAAATACT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MPSVFQLQALCAAVEKPSLRQAAEALCKTQPALTHALKQLESQLGLPLFNRDGYRLVLTGSGERIYQLALKTLESHAELE
QLAQHLARGDEDRVVLTVEASFDLTPILSALESVQAEFSQTEIVIQQEYLTGAVERVQQGHANLAITPLAPALSPGTRLD
TQPLSQGQMLNVAAPRLLARYPSLCSILELRKEYQILVQDSGSGTLGLKLGVQSAQRHWYVNSFATKLSLIEQGMGWGRL
PEWMLTEALAAGRLQLLELADFPARQRFDYHLVRRSASVPGPVATRLWQRLGGGAL

Sequences:

>Translated_296_residues
MPSVFQLQALCAAVEKPSLRQAAEALCKTQPALTHALKQLESQLGLPLFNRDGYRLVLTGSGERIYQLALKTLESHAELE
QLAQHLARGDEDRVVLTVEASFDLTPILSALESVQAEFSQTEIVIQQEYLTGAVERVQQGHANLAITPLAPALSPGTRLD
TQPLSQGQMLNVAAPRLLARYPSLCSILELRKEYQILVQDSGSGTLGLKLGVQSAQRHWYVNSFATKLSLIEQGMGWGRL
PEWMLTEALAAGRLQLLELADFPARQRFDYHLVRRSASVPGPVATRLWQRLGGGAL
>Mature_295_residues
PSVFQLQALCAAVEKPSLRQAAEALCKTQPALTHALKQLESQLGLPLFNRDGYRLVLTGSGERIYQLALKTLESHAELEQ
LAQHLARGDEDRVVLTVEASFDLTPILSALESVQAEFSQTEIVIQQEYLTGAVERVQQGHANLAITPLAPALSPGTRLDT
QPLSQGQMLNVAAPRLLARYPSLCSILELRKEYQILVQDSGSGTLGLKLGVQSAQRHWYVNSFATKLSLIEQGMGWGRLP
EWMLTEALAAGRLQLLELADFPARQRFDYHLVRRSASVPGPVATRLWQRLGGGAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=252, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786508, Length=262, Percent_Identity=26.7175572519084, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082024, Length=255, Percent_Identity=25.0980392156863, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32525; Mature: 32394

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSVFQLQALCAAVEKPSLRQAAEALCKTQPALTHALKQLESQLGLPLFNRDGYRLVLTG
CCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEECCCCCEEEEEC
SGERIYQLALKTLESHAELEQLAQHLARGDEDRVVLTVEASFDLTPILSALESVQAEFSQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
TEIVIQQEYLTGAVERVQQGHANLAITPLAPALSPGTRLDTQPLSQGQMLNVAAPRLLAR
HHHEEHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHH
YPSLCSILELRKEYQILVQDSGSGTLGLKLGVQSAQRHWYVNSFATKLSLIEQGMGWGRL
HHHHHHHHHHHHHHEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PEWMLTEALAAGRLQLLELADFPARQRFDYHLVRRSASVPGPVATRLWQRLGGGAL
HHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PSVFQLQALCAAVEKPSLRQAAEALCKTQPALTHALKQLESQLGLPLFNRDGYRLVLTG
CCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEECCCCCEEEEEC
SGERIYQLALKTLESHAELEQLAQHLARGDEDRVVLTVEASFDLTPILSALESVQAEFSQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
TEIVIQQEYLTGAVERVQQGHANLAITPLAPALSPGTRLDTQPLSQGQMLNVAAPRLLAR
HHHEEHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHH
YPSLCSILELRKEYQILVQDSGSGTLGLKLGVQSAQRHWYVNSFATKLSLIEQGMGWGRL
HHHHHHHHHHHHHHEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PEWMLTEALAAGRLQLLELADFPARQRFDYHLVRRSASVPGPVATRLWQRLGGGAL
HHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]