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The map label for this gene is yibH [H]

Identifier: 119775937

GI number: 119775937

Start: 3344416

End: 3345561

Strand: Reverse

Name: yibH [H]

Synonym: Sama_2805

Alternate gene names: 119775937

Gene position: 3345561-3344416 (Counterclockwise)

Preceding gene: 119775938

Following gene: 119775936

Centisome position: 77.69

GC content: 57.33

Gene sequence:

>1146_bases
ATGGATTTACTGCTTATCCTGACCTACGCCGCCATCTGTGTGGTGATATTTAAAGTCTTCAAAATCCCCCTCAACAAATG
GACAGTACCCACAGCGGTATTGGGCGGCATAGTGCTTTTGGGCACCTTGTTGCTGCTGATGAATTACAACCATCCCTACA
GCCGCTTTGCCCGCGAGTATTTTGTAACCGTGCCCATTAATCCTTTGGTCACCGGCAAGGTGGTGGAAGTGGCCGTGATG
CCCAATGTACCTATTCGTGAAGGCGAGGTGCTGTTTCGGCTGGACCCCAGACCCTTTGAGTCAGCGCTTATCCAAAAGCA
GGCGGCATTGAAAGCGGCGGAGCAGGAAGTGCCTCAGCTTGAGGCCGCGTGGGAAACCGCCAGGGCCAGTGTTGAGCGTG
CTCAGGCCGACAGAGACAGAAGCAAGTCTGAGTACGAGCGTTACGAAGCCGGTCGTCGCAAGGGGGGAGCCAACTCGCCT
TTTACTGCCCTCGAACTGGATAACAAGCGTCAGCTCTACTTTGCTGCCGAAGCCCAGCTCACCGCCGCCAGGGCCGAGGA
AATGCGGGTTCGCTATGCCTATGAGTCCAATATCGATGGGGTGAATACCAAGGTGGCCGCGGCCAGGGCCGAAGTTGCCA
AGGCCGAGTTTGACCTGGAACAATCTGTGGTGCGTGCACCCACAGATGGCGTTGTCACTCACATGGCCCTGCGTCCAGGT
ATGGTGGTGGTACCCATGCCGCTCAGGCCGGTGATGAGCTTCATTCCCAATGAACAGCGTTATTTTGTGGGCGCGTTTTG
GCAAAACTCCATGCTGAGGCTCAAGGCCGGTGACCAAGCCGAGGTGATACTGGATGCGGCTCCCGGACAGGTGTTTAAAG
GCCGGGTTGCCCGGGTTCTACCCGCCATGGCCGAGGGCGAGGTGCAGGCCAACGGTCAGCTGCAATCCTCCGCCAGAATG
TTCCAGCGGGGCAGGGTGTTGGTGATGATTGAGTTTGACCGCTCCGACGAGATTCAGGCTTTTCCGGCCGGGGTCGCAGG
TCAGGTGGCCATCTACACAGATCACTTCTCCCATGTTGCCGTGATGCGAAAAGTGCTGCTGAGAATGCAGGGCTGGCTTA
ACTACCTCTTCGGCGAGGGGCACTAG

Upstream 100 bases:

>100_bases
TCAGTGCTGACCTGAAGGCACTGGAGACTCGGCTGCAGTCGTTGGAGTCAGGCGGCACGCAAACGTCCGCAGTTCAATCC
CGGGATGAGGAGAAATAATC

Downstream 100 bases:

>100_bases
GCCTTAGCCCCTGTCCAGACTCAGTAAATCCATGCATAATCCAGAGGCCCACCCCAAGGGCCTCTTTTGTTAGCCGGAAG
ACAAGATGCAGGATATCAAG

Product: HlyD family secretion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MDLLLILTYAAICVVIFKVFKIPLNKWTVPTAVLGGIVLLGTLLLLMNYNHPYSRFAREYFVTVPINPLVTGKVVEVAVM
PNVPIREGEVLFRLDPRPFESALIQKQAALKAAEQEVPQLEAAWETARASVERAQADRDRSKSEYERYEAGRRKGGANSP
FTALELDNKRQLYFAAEAQLTAARAEEMRVRYAYESNIDGVNTKVAAARAEVAKAEFDLEQSVVRAPTDGVVTHMALRPG
MVVVPMPLRPVMSFIPNEQRYFVGAFWQNSMLRLKAGDQAEVILDAAPGQVFKGRVARVLPAMAEGEVQANGQLQSSARM
FQRGRVLVMIEFDRSDEIQAFPAGVAGQVAIYTDHFSHVAVMRKVLLRMQGWLNYLFGEGH

Sequences:

>Translated_381_residues
MDLLLILTYAAICVVIFKVFKIPLNKWTVPTAVLGGIVLLGTLLLLMNYNHPYSRFAREYFVTVPINPLVTGKVVEVAVM
PNVPIREGEVLFRLDPRPFESALIQKQAALKAAEQEVPQLEAAWETARASVERAQADRDRSKSEYERYEAGRRKGGANSP
FTALELDNKRQLYFAAEAQLTAARAEEMRVRYAYESNIDGVNTKVAAARAEVAKAEFDLEQSVVRAPTDGVVTHMALRPG
MVVVPMPLRPVMSFIPNEQRYFVGAFWQNSMLRLKAGDQAEVILDAAPGQVFKGRVARVLPAMAEGEVQANGQLQSSARM
FQRGRVLVMIEFDRSDEIQAFPAGVAGQVAIYTDHFSHVAVMRKVLLRMQGWLNYLFGEGH
>Mature_381_residues
MDLLLILTYAAICVVIFKVFKIPLNKWTVPTAVLGGIVLLGTLLLLMNYNHPYSRFAREYFVTVPINPLVTGKVVEVAVM
PNVPIREGEVLFRLDPRPFESALIQKQAALKAAEQEVPQLEAAWETARASVERAQADRDRSKSEYERYEAGRRKGGANSP
FTALELDNKRQLYFAAEAQLTAARAEEMRVRYAYESNIDGVNTKVAAARAEVAKAEFDLEQSVVRAPTDGVVTHMALRPG
MVVVPMPLRPVMSFIPNEQRYFVGAFWQNSMLRLKAGDQAEVILDAAPGQVFKGRVARVLPAMAEGEVQANGQLQSSARM
FQRGRVLVMIEFDRSDEIQAFPAGVAGQVAIYTDHFSHVAVMRKVLLRMQGWLNYLFGEGH

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790024, Length=377, Percent_Identity=44.5623342175066, Blast_Score=349, Evalue=2e-97,
Organism=Escherichia coli, GI1790012, Length=377, Percent_Identity=44.5623342175066, Blast_Score=348, Evalue=2e-97,
Organism=Escherichia coli, GI1790519, Length=244, Percent_Identity=28.6885245901639, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 42485; Mature: 42485

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLLILTYAAICVVIFKVFKIPLNKWTVPTAVLGGIVLLGTLLLLMNYNHPYSRFAREY
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHE
FVTVPINPLVTGKVVEVAVMPNVPIREGEVLFRLDPRPFESALIQKQAALKAAEQEVPQL
EEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCHHH
EAAWETARASVERAQADRDRSKSEYERYEAGRRKGGANSPFTALELDNKRQLYFAAEAQL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECHHH
TAARAEEMRVRYAYESNIDGVNTKVAAARAEVAKAEFDLEQSVVRAPTDGVVTHMALRPG
HHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCC
MVVVPMPLRPVMSFIPNEQRYFVGAFWQNSMLRLKAGDQAEVILDAAPGQVFKGRVARVL
EEEECCCHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHH
PAMAEGEVQANGQLQSSARMFQRGRVLVMIEFDRSDEIQAFPAGVAGQVAIYTDHFSHVA
HHHHCCCEECCCCHHHHHHHHHCCCEEEEEEECCCCCCEECCCCCCCEEEEEECCHHHHH
VMRKVLLRMQGWLNYLFGEGH
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDLLLILTYAAICVVIFKVFKIPLNKWTVPTAVLGGIVLLGTLLLLMNYNHPYSRFAREY
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHE
FVTVPINPLVTGKVVEVAVMPNVPIREGEVLFRLDPRPFESALIQKQAALKAAEQEVPQL
EEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCHHH
EAAWETARASVERAQADRDRSKSEYERYEAGRRKGGANSPFTALELDNKRQLYFAAEAQL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECHHH
TAARAEEMRVRYAYESNIDGVNTKVAAARAEVAKAEFDLEQSVVRAPTDGVVTHMALRPG
HHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCC
MVVVPMPLRPVMSFIPNEQRYFVGAFWQNSMLRLKAGDQAEVILDAAPGQVFKGRVARVL
EEEECCCHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHH
PAMAEGEVQANGQLQSSARMFQRGRVLVMIEFDRSDEIQAFPAGVAGQVAIYTDHFSHVA
HHHHCCCEECCCCHHHHHHHHHCCCEEEEEEECCCCCCEECCCCCCCEEEEEECCHHHHH
VMRKVLLRMQGWLNYLFGEGH
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]