| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is yeaR [C]
Identifier: 119775922
GI number: 119775922
Start: 3330555
End: 3330977
Strand: Reverse
Name: yeaR [C]
Synonym: Sama_2790
Alternate gene names: 119775922
Gene position: 3330977-3330555 (Counterclockwise)
Preceding gene: 119775924
Following gene: 119775918
Centisome position: 77.35
GC content: 52.48
Gene sequence:
>423_bases ATGGCATTGATACCGAAAAATTATGTTCCAGTGGGTTCCACCCGGATATTCGGCGGTAATGATATACCTGAAATGCTGTT GTCGCAGCATCGTACCCGAAATGGCTTTTACAGCCAGATTGAGGTCATTGAAGGTGAGCTCTTATGGCAAGGTTTTGGCG ACACAGATGGCAAGCCCGGTATTGAGGTGCACCTGCGCGCCAACGACAGGGCCATGACCCACCCCGGCAAGTGTTACAGC GTGAAGCTGCTCAGCGATGAGACCCGTTTCAGACTCAATGTGTTTGCCCATCAAAGCCTGCAGGAAAGCAATGTCGATGT CAGCAGCACAGTGGGGCTCTTTCTCGAACCCCTTGCTCCGGACCTGACGCCTGTGGCTAAACAGACTGAGGATACTGATT GCGAACTTCAGGCAGATCGCTGA
Upstream 100 bases:
>100_bases GTGGTATAAACTTGTCGGCATTGCGATGCTCAAGAGTTTGGTGGCTTGGGATATGTTCCCAAAGCAGGCTTAAATTCAGG TGAAACCGGAGACAGCGCCC
Downstream 100 bases:
>100_bases GGTATTCCACAAACTCCACTTCCATGCCATCGGGGTCGATAAAGTACACATTGCGTCGGCCCGAATCTGGGGCACCGTCT TTGGCAATGGCAAAACCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MALIPKNYVPVGSTRIFGGNDIPEMLLSQHRTRNGFYSQIEVIEGELLWQGFGDTDGKPGIEVHLRANDRAMTHPGKCYS VKLLSDETRFRLNVFAHQSLQESNVDVSSTVGLFLEPLAPDLTPVAKQTEDTDCELQADR
Sequences:
>Translated_140_residues MALIPKNYVPVGSTRIFGGNDIPEMLLSQHRTRNGFYSQIEVIEGELLWQGFGDTDGKPGIEVHLRANDRAMTHPGKCYS VKLLSDETRFRLNVFAHQSLQESNVDVSSTVGLFLEPLAPDLTPVAKQTEDTDCELQADR >Mature_139_residues ALIPKNYVPVGSTRIFGGNDIPEMLLSQHRTRNGFYSQIEVIEGELLWQGFGDTDGKPGIEVHLRANDRAMTHPGKCYSV KLLSDETRFRLNVFAHQSLQESNVDVSSTVGLFLEPLAPDLTPVAKQTEDTDCELQADR
Specific function: Unknown
COG id: COG3615
COG function: function code P; Uncharacterized protein/domain, possibly involved in tellurite resistance
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15603; Mature: 15472
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALIPKNYVPVGSTRIFGGNDIPEMLLSQHRTRNGFYSQIEVIEGELLWQGFGDTDGKPG CCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCCCCCCC IEVHLRANDRAMTHPGKCYSVKLLSDETRFRLNVFAHQSLQESNVDVSSTVGLFLEPLAP EEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHCCCCCHHHHHEEECCCCC DLTPVAKQTEDTDCELQADR CCCCCCCCCCCCCCEEEECC >Mature Secondary Structure ALIPKNYVPVGSTRIFGGNDIPEMLLSQHRTRNGFYSQIEVIEGELLWQGFGDTDGKPG CCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCCCCCCC IEVHLRANDRAMTHPGKCYSVKLLSDETRFRLNVFAHQSLQESNVDVSSTVGLFLEPLAP EEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHCCCCCHHHHHEEECCCCC DLTPVAKQTEDTDCELQADR CCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA