Click here to switch to the map view.

The map label for this gene is ygiF [H]

Identifier: 119775804

GI number: 119775804

Start: 3197203

End: 3198681

Strand: Reverse

Name: ygiF [H]

Synonym: Sama_2672

Alternate gene names: 119775804

Gene position: 3198681-3197203 (Counterclockwise)

Preceding gene: 119775810

Following gene: 119775795

Centisome position: 74.28

GC content: 56.93

Gene sequence:

>1479_bases
ATGGAAGCCGAGATAGAACTCAAGCTTTTTTTCCTTCCCGAATATAAAGATAGCCTCATCCAGGCACTCAATAACAGATT
TCCGCACAGTATCCGCGACGACGCTCAGTTGAGCAACGGATACTTTGATACCCCCGACATGCAATTGCGACACTGGGATA
TGGGCCTCAGGGTACGTGGTCGCAATGGCAAGCGCGAGCAAACTATCAAGACCGCCGGCAAGGTGGTTGGCGGCATTCAT
ACCCGTCCCGAGTATAACGTCGATATTGACGCAGATATTCCGGACTTGTCGCTGTTTCCGGCGGACATTTGGCCAGAAGG
CGCAGCTCTTGAAGCGACTCAGGCGCGCCTCGCCTGTATTTTCAATACCGATTTCAGGCGTCTCACCTGGCTCGTGGAAG
AGGGGCAAACTCGTATCGAAATCGCTCTGGATCAGGGACTGATTTGCGCCGCGGGTAAGGAAGAGCCCCTGTGTGAACTC
GAATTTGAACTGATGGCAGGCGAGCCTCTGGCCCTCCTTGATTTGGCCGCAGAGCTCGCTGGTTCCCTCCCGTTGCGCTT
AGGTAAGGCCAGCAAGGCGCAGCGTGGTTACCGACTCGCAGGAATGGCCTCCAAAGCGGCCCCTCAGGTGCTGGAAACCA
TTCCGATTGCCCCCTCTGCCAGCGCAGAGCAAGCCCTGACGACCCTTCTTGAAACCGCCCTTGAGCGATGGCAGTTGCTG
GAAGATTTGCTGGGGCAATCCGTGGCCGATCCCAATGGCTGTGCCTCGCTTTGGTTAAGGATGCGCAGCTGTATTGGGCT
GCTCGAAGCCAGCTGCCGTCATTTTGGCTTGTTAACGCCCGAGCTCGAGGCCGGCTTCAACGACATTCGTCAGGCCTTGG
GGTTTGTGGACGAGCTTACAGCGCTTACCTTTATTGCTGAAAATCGTGATTCGTTGCTGGGACGGCGAAAAGATGCACTG
CTTTGGCAACAGGAAGCACAGGCGCGCCTTGGTGCCGAGGCCTCGACCGAAAGGTTGCAAGCCCTGTGGCGTATGCCCAC
CTACGGTCAGGTGCAATTGGCGTTGGTTCGGCTACTGATGTTGCCAAAGCCCGTGGCTGAAAATGGTCTTCGTCAGGTAG
CCGATTCGCTGCTGCAGGCATCCTGGAAATGCATTCAAGCTTTGATGCCAGAGCAGGGTGCCCAAAGCCCAAGGGCCTGT
GACTTTTTGCGGCTTGGCAGTGTGCTCGATGAAGCACTCTTGGTGGGGCTTGCCTATGGAGAGCTGTACAGTAGCGATGC
CAGGCGTCAGTACCGGGCACCCTGGCAAGACCTTCGCCGTGGCATAGATACCCTGAGAGCCTATGTCTTGCTGGGAGAGT
TGGCTGGCCCTGAGGCCGAGATGCAGGAGTGGCTCGACGATAAGTCCTTAAGCCTGATGCACGCGTTGGAGCAGAGCCGC
CGCTCGGCCCTGGCCCAATTGCCATACTGGCTGAGTTGA

Upstream 100 bases:

>100_bases
CACGGCGCGCATCATACTGAAGAATTGTGACAACAGTATGACATTATGACGCTCAGGTGTCAGTTTGATGAATTTTTGAT
GAACTTCAGGGCCCTTTTCA

Downstream 100 bases:

>100_bases
CGCCGACCTGCGGATTGCCATTATGTCCCGACAAGGCAGATAGTTTGGTTCAAACCAATCTATAAAAACGCCCGAAATTT
TCGGGCGTTTTTTATGGATT

Product: hypothetical protein

Products: NA

Alternate protein names: ORFXE [H]

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MEAEIELKLFFLPEYKDSLIQALNNRFPHSIRDDAQLSNGYFDTPDMQLRHWDMGLRVRGRNGKREQTIKTAGKVVGGIH
TRPEYNVDIDADIPDLSLFPADIWPEGAALEATQARLACIFNTDFRRLTWLVEEGQTRIEIALDQGLICAAGKEEPLCEL
EFELMAGEPLALLDLAAELAGSLPLRLGKASKAQRGYRLAGMASKAAPQVLETIPIAPSASAEQALTTLLETALERWQLL
EDLLGQSVADPNGCASLWLRMRSCIGLLEASCRHFGLLTPELEAGFNDIRQALGFVDELTALTFIAENRDSLLGRRKDAL
LWQQEAQARLGAEASTERLQALWRMPTYGQVQLALVRLLMLPKPVAENGLRQVADSLLQASWKCIQALMPEQGAQSPRAC
DFLRLGSVLDEALLVGLAYGELYSSDARRQYRAPWQDLRRGIDTLRAYVLLGELAGPEAEMQEWLDDKSLSLMHALEQSR
RSALAQLPYWLS

Sequences:

>Translated_492_residues
MEAEIELKLFFLPEYKDSLIQALNNRFPHSIRDDAQLSNGYFDTPDMQLRHWDMGLRVRGRNGKREQTIKTAGKVVGGIH
TRPEYNVDIDADIPDLSLFPADIWPEGAALEATQARLACIFNTDFRRLTWLVEEGQTRIEIALDQGLICAAGKEEPLCEL
EFELMAGEPLALLDLAAELAGSLPLRLGKASKAQRGYRLAGMASKAAPQVLETIPIAPSASAEQALTTLLETALERWQLL
EDLLGQSVADPNGCASLWLRMRSCIGLLEASCRHFGLLTPELEAGFNDIRQALGFVDELTALTFIAENRDSLLGRRKDAL
LWQQEAQARLGAEASTERLQALWRMPTYGQVQLALVRLLMLPKPVAENGLRQVADSLLQASWKCIQALMPEQGAQSPRAC
DFLRLGSVLDEALLVGLAYGELYSSDARRQYRAPWQDLRRGIDTLRAYVLLGELAGPEAEMQEWLDDKSLSLMHALEQSR
RSALAQLPYWLS
>Mature_492_residues
MEAEIELKLFFLPEYKDSLIQALNNRFPHSIRDDAQLSNGYFDTPDMQLRHWDMGLRVRGRNGKREQTIKTAGKVVGGIH
TRPEYNVDIDADIPDLSLFPADIWPEGAALEATQARLACIFNTDFRRLTWLVEEGQTRIEIALDQGLICAAGKEEPLCEL
EFELMAGEPLALLDLAAELAGSLPLRLGKASKAQRGYRLAGMASKAAPQVLETIPIAPSASAEQALTTLLETALERWQLL
EDLLGQSVADPNGCASLWLRMRSCIGLLEASCRHFGLLTPELEAGFNDIRQALGFVDELTALTFIAENRDSLLGRRKDAL
LWQQEAQARLGAEASTERLQALWRMPTYGQVQLALVRLLMLPKPVAENGLRQVADSLLQASWKCIQALMPEQGAQSPRAC
DFLRLGSVLDEALLVGLAYGELYSSDARRQYRAPWQDLRRGIDTLRAYVLLGELAGPEAEMQEWLDDKSLSLMHALEQSR
RSALAQLPYWLS

Specific function: Unknown

COG id: COG3025

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1598 [H]

Homologues:

Organism=Escherichia coli, GI1789434, Length=243, Percent_Identity=43.2098765432099, Blast_Score=174, Evalue=8e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008172
- InterPro:   IPR004206 [H]

Pfam domain/function: PF01928 CYTH [H]

EC number: NA

Molecular weight: Translated: 54792; Mature: 54792

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAEIELKLFFLPEYKDSLIQALNNRFPHSIRDDAQLSNGYFDTPDMQLRHWDMGLRVRG
CCCEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCEEEEECCCEEEEC
RNGKREQTIKTAGKVVGGIHTRPEYNVDIDADIPDLSLFPADIWPEGAALEATQARLACI
CCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHEEEE
FNTDFRRLTWLVEEGQTRIEIALDQGLICAAGKEEPLCELEFELMAGEPLALLDLAAELA
ECCCHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCHHEEHHHHCCCCHHHHHHHHHHH
GSLPLRLGKASKAQRGYRLAGMASKAAPQVLETIPIAPSASAEQALTTLLETALERWQLL
CCCCCCCCCCHHHHCCCCHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
EDLLGQSVADPNGCASLWLRMRSCIGLLEASCRHFGLLTPELEAGFNDIRQALGFVDELT
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
ALTFIAENRDSLLGRRKDALLWQQEAQARLGAEASTERLQALWRMPTYGQVQLALVRLLM
HHHHHHCCHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
LPKPVAENGLRQVADSLLQASWKCIQALMPEQGAQSPRACDFLRLGSVLDEALLVGLAYG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ELYSSDARRQYRAPWQDLRRGIDTLRAYVLLGELAGPEAEMQEWLDDKSLSLMHALEQSR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHH
RSALAQLPYWLS
HHHHHHCCCCCC
>Mature Secondary Structure
MEAEIELKLFFLPEYKDSLIQALNNRFPHSIRDDAQLSNGYFDTPDMQLRHWDMGLRVRG
CCCEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCEEEEECCCEEEEC
RNGKREQTIKTAGKVVGGIHTRPEYNVDIDADIPDLSLFPADIWPEGAALEATQARLACI
CCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHEEEE
FNTDFRRLTWLVEEGQTRIEIALDQGLICAAGKEEPLCELEFELMAGEPLALLDLAAELA
ECCCHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCHHEEHHHHCCCCHHHHHHHHHHH
GSLPLRLGKASKAQRGYRLAGMASKAAPQVLETIPIAPSASAEQALTTLLETALERWQLL
CCCCCCCCCCHHHHCCCCHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
EDLLGQSVADPNGCASLWLRMRSCIGLLEASCRHFGLLTPELEAGFNDIRQALGFVDELT
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
ALTFIAENRDSLLGRRKDALLWQQEAQARLGAEASTERLQALWRMPTYGQVQLALVRLLM
HHHHHHCCHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
LPKPVAENGLRQVADSLLQASWKCIQALMPEQGAQSPRACDFLRLGSVLDEALLVGLAYG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ELYSSDARRQYRAPWQDLRRGIDTLRAYVLLGELAGPEAEMQEWLDDKSLSLMHALEQSR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHH
RSALAQLPYWLS
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8412694; 9278503 [H]