Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is ybeZ [H]

Identifier: 119775708

GI number: 119775708

Start: 3083549

End: 3084619

Strand: Direct

Name: ybeZ [H]

Synonym: Sama_2576

Alternate gene names: 119775708

Gene position: 3083549-3084619 (Clockwise)

Preceding gene: 119775707

Following gene: 119775709

Centisome position: 71.61

GC content: 54.34

Gene sequence:

>1071_bases
TTGGCCAGTAAACTTACCACCATGAACCTCTATCTGGAGCCCGCAGACAGCCGCCGTTTGGCCTCCCTCTGTGGTCCCTT
TGATGACAACATCAAACAGCTCGAGCGCCGTATCGGTGTTGAAATCAGTTACCGCAACAACCATTTTCAGATTGTGGGTC
AGCCACGCAACTGCCTGACTGCCAATAACCTGCTCAAATCCTTGTATGTGGAAACCGCACCGGTGAAGGGCAGTACGCCT
GATCTGGAGCCGGAGCAGGTGCATATCGCCATTCAGGAAGCCATTGCCCTGGAAGCCGAAGACGAGCATGAGGATCTGAA
AGAGCATTACATCAAGACCCGCCGGGGTGTAATTAAGCCGCGCAATCCCAATCAGAGCCAATATGTGGTCAACATAGTGC
GCCACGACATCACCTTTGGTATTGGCCCCGCGGGTACAGGTAAAACCTACCTTGCAGTAGCTGCCGCAGTGGATGCGCTT
GAGCGCCAGGAAATCCGTCGAATCCTGCTGACACGCCCTGCGGTGGAAGCGGGCGAGAAACTGGGCTTTTTGCCCGGCGA
TTTGAGTCAGAAAGTCGACCCTTATCTGCGCCCACTGTACGATGCCCTGTTTGAAATGCTCGGCTTTGAAAAGGTTGAAC
GCCTGATTGAGCGCAGCGTGATTGAAATTGCGCCACTGGCCTATATGCGTGGCCGCACCCTGAATGATGCTTTTATCATT
CTGGATGAGAGCCAAAACACCACGGTGGAGCAGATGAAAATGTTCCTCACCCGTATCGGCTTTAACTCCAAGGCCGTGAT
CACCGGCGACATCACCCAGATTGACCTGCCCAAGCATCAAAAGTCAGGTCTGCGCCATGCCATCGAAGTGCTGGGCGATG
TGAATGAAATCAGCTTTAACTTCTTCCAGTCCAAAGACGTGGTGCGCCACCCCGTGGTTGCCCGTATCGTTGAGGCATAC
GAAGAGTTCGAAGCCAAACAGCAGGCAAACAAAGGCCGTCACGACAGCCAATACCGTCTGGCAGACAGCCCTCAGGCAGA
CACCGCCGAAGGAGAACCCCATGGCGCTTGA

Upstream 100 bases:

>100_bases
CACCGCACCGCTTTGCATCACAGCCGCGAAACGCAGTATATTTCAGCTATAGGCGTTGGGCATTTGCCCAACTTTATGGA
TATTGACGCCGGAGTATTGA

Downstream 100 bases:

>100_bases
ACTGGCGTTGGATCTGCAATTTGCTGTGAATCCCGGTAATTTGCCCACAGAAGCAGAGTTTGAGACCTGGGTACGTGTCG
CCCTTGGCGATACCCTCGAT

Product: PhoH family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MASKLTTMNLYLEPADSRRLASLCGPFDDNIKQLERRIGVEISYRNNHFQIVGQPRNCLTANNLLKSLYVETAPVKGSTP
DLEPEQVHIAIQEAIALEAEDEHEDLKEHYIKTRRGVIKPRNPNQSQYVVNIVRHDITFGIGPAGTGKTYLAVAAAVDAL
ERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVERLIERSVIEIAPLAYMRGRTLNDAFII
LDESQNTTVEQMKMFLTRIGFNSKAVITGDITQIDLPKHQKSGLRHAIEVLGDVNEISFNFFQSKDVVRHPVVARIVEAY
EEFEAKQQANKGRHDSQYRLADSPQADTAEGEPHGA

Sequences:

>Translated_356_residues
MASKLTTMNLYLEPADSRRLASLCGPFDDNIKQLERRIGVEISYRNNHFQIVGQPRNCLTANNLLKSLYVETAPVKGSTP
DLEPEQVHIAIQEAIALEAEDEHEDLKEHYIKTRRGVIKPRNPNQSQYVVNIVRHDITFGIGPAGTGKTYLAVAAAVDAL
ERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVERLIERSVIEIAPLAYMRGRTLNDAFII
LDESQNTTVEQMKMFLTRIGFNSKAVITGDITQIDLPKHQKSGLRHAIEVLGDVNEISFNFFQSKDVVRHPVVARIVEAY
EEFEAKQQANKGRHDSQYRLADSPQADTAEGEPHGA
>Mature_355_residues
ASKLTTMNLYLEPADSRRLASLCGPFDDNIKQLERRIGVEISYRNNHFQIVGQPRNCLTANNLLKSLYVETAPVKGSTPD
LEPEQVHIAIQEAIALEAEDEHEDLKEHYIKTRRGVIKPRNPNQSQYVVNIVRHDITFGIGPAGTGKTYLAVAAAVDALE
RQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVERLIERSVIEIAPLAYMRGRTLNDAFIIL
DESQNTTVEQMKMFLTRIGFNSKAVITGDITQIDLPKHQKSGLRHAIEVLGDVNEISFNFFQSKDVVRHPVVARIVEAYE
EFEAKQQANKGRHDSQYRLADSPQADTAEGEPHGA

Specific function: Unknown

COG id: COG1702

COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phoH family [H]

Homologues:

Organism=Escherichia coli, GI145693103, Length=330, Percent_Identity=76.3636363636364, Blast_Score=499, Evalue=1e-142,
Organism=Escherichia coli, GI1787257, Length=205, Percent_Identity=44.390243902439, Blast_Score=181, Evalue=6e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003714 [H]

Pfam domain/function: PF02562 PhoH [H]

EC number: NA

Molecular weight: Translated: 40057; Mature: 39926

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKLTTMNLYLEPADSRRLASLCGPFDDNIKQLERRIGVEISYRNNHFQIVGQPRNCLT
CCCCEEEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHCCEEEEECCEEEEEECCCHHHH
ANNLLKSLYVETAPVKGSTPDLEPEQVHIAIQEAIALEAEDEHEDLKEHYIKTRRGVIKP
HHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
RNPNQSQYVVNIVRHDITFGIGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEK
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVERLIERSVIEIAPLAYMRGRTLNDAFII
CCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
LDESQNTTVEQMKMFLTRIGFNSKAVITGDITQIDLPKHQKSGLRHAIEVLGDVNEISFN
EECCCCCHHHHHHHHHHHHCCCCCEEEECCCEEECCCCHHHHHHHHHHHHHCCHHHHHHH
FFQSKDVVRHPVVARIVEAYEEFEAKQQANKGRHDSQYRLADSPQADTAEGEPHGA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASKLTTMNLYLEPADSRRLASLCGPFDDNIKQLERRIGVEISYRNNHFQIVGQPRNCLT
CCCEEEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHCCEEEEECCEEEEEECCCHHHH
ANNLLKSLYVETAPVKGSTPDLEPEQVHIAIQEAIALEAEDEHEDLKEHYIKTRRGVIKP
HHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
RNPNQSQYVVNIVRHDITFGIGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEK
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVERLIERSVIEIAPLAYMRGRTLNDAFII
CCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
LDESQNTTVEQMKMFLTRIGFNSKAVITGDITQIDLPKHQKSGLRHAIEVLGDVNEISFN
EECCCCCHHHHHHHHHHHHCCCCCEEEECCCEEECCCCHHHHHHHHHHHHHCCHHHHHHH
FFQSKDVVRHPVVARIVEAYEEFEAKQQANKGRHDSQYRLADSPQADTAEGEPHGA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]