Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
---|---|
Accession | NC_008700 |
Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is ybeZ [H]
Identifier: 119775708
GI number: 119775708
Start: 3083549
End: 3084619
Strand: Direct
Name: ybeZ [H]
Synonym: Sama_2576
Alternate gene names: 119775708
Gene position: 3083549-3084619 (Clockwise)
Preceding gene: 119775707
Following gene: 119775709
Centisome position: 71.61
GC content: 54.34
Gene sequence:
>1071_bases TTGGCCAGTAAACTTACCACCATGAACCTCTATCTGGAGCCCGCAGACAGCCGCCGTTTGGCCTCCCTCTGTGGTCCCTT TGATGACAACATCAAACAGCTCGAGCGCCGTATCGGTGTTGAAATCAGTTACCGCAACAACCATTTTCAGATTGTGGGTC AGCCACGCAACTGCCTGACTGCCAATAACCTGCTCAAATCCTTGTATGTGGAAACCGCACCGGTGAAGGGCAGTACGCCT GATCTGGAGCCGGAGCAGGTGCATATCGCCATTCAGGAAGCCATTGCCCTGGAAGCCGAAGACGAGCATGAGGATCTGAA AGAGCATTACATCAAGACCCGCCGGGGTGTAATTAAGCCGCGCAATCCCAATCAGAGCCAATATGTGGTCAACATAGTGC GCCACGACATCACCTTTGGTATTGGCCCCGCGGGTACAGGTAAAACCTACCTTGCAGTAGCTGCCGCAGTGGATGCGCTT GAGCGCCAGGAAATCCGTCGAATCCTGCTGACACGCCCTGCGGTGGAAGCGGGCGAGAAACTGGGCTTTTTGCCCGGCGA TTTGAGTCAGAAAGTCGACCCTTATCTGCGCCCACTGTACGATGCCCTGTTTGAAATGCTCGGCTTTGAAAAGGTTGAAC GCCTGATTGAGCGCAGCGTGATTGAAATTGCGCCACTGGCCTATATGCGTGGCCGCACCCTGAATGATGCTTTTATCATT CTGGATGAGAGCCAAAACACCACGGTGGAGCAGATGAAAATGTTCCTCACCCGTATCGGCTTTAACTCCAAGGCCGTGAT CACCGGCGACATCACCCAGATTGACCTGCCCAAGCATCAAAAGTCAGGTCTGCGCCATGCCATCGAAGTGCTGGGCGATG TGAATGAAATCAGCTTTAACTTCTTCCAGTCCAAAGACGTGGTGCGCCACCCCGTGGTTGCCCGTATCGTTGAGGCATAC GAAGAGTTCGAAGCCAAACAGCAGGCAAACAAAGGCCGTCACGACAGCCAATACCGTCTGGCAGACAGCCCTCAGGCAGA CACCGCCGAAGGAGAACCCCATGGCGCTTGA
Upstream 100 bases:
>100_bases CACCGCACCGCTTTGCATCACAGCCGCGAAACGCAGTATATTTCAGCTATAGGCGTTGGGCATTTGCCCAACTTTATGGA TATTGACGCCGGAGTATTGA
Downstream 100 bases:
>100_bases ACTGGCGTTGGATCTGCAATTTGCTGTGAATCCCGGTAATTTGCCCACAGAAGCAGAGTTTGAGACCTGGGTACGTGTCG CCCTTGGCGATACCCTCGAT
Product: PhoH family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MASKLTTMNLYLEPADSRRLASLCGPFDDNIKQLERRIGVEISYRNNHFQIVGQPRNCLTANNLLKSLYVETAPVKGSTP DLEPEQVHIAIQEAIALEAEDEHEDLKEHYIKTRRGVIKPRNPNQSQYVVNIVRHDITFGIGPAGTGKTYLAVAAAVDAL ERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVERLIERSVIEIAPLAYMRGRTLNDAFII LDESQNTTVEQMKMFLTRIGFNSKAVITGDITQIDLPKHQKSGLRHAIEVLGDVNEISFNFFQSKDVVRHPVVARIVEAY EEFEAKQQANKGRHDSQYRLADSPQADTAEGEPHGA
Sequences:
>Translated_356_residues MASKLTTMNLYLEPADSRRLASLCGPFDDNIKQLERRIGVEISYRNNHFQIVGQPRNCLTANNLLKSLYVETAPVKGSTP DLEPEQVHIAIQEAIALEAEDEHEDLKEHYIKTRRGVIKPRNPNQSQYVVNIVRHDITFGIGPAGTGKTYLAVAAAVDAL ERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVERLIERSVIEIAPLAYMRGRTLNDAFII LDESQNTTVEQMKMFLTRIGFNSKAVITGDITQIDLPKHQKSGLRHAIEVLGDVNEISFNFFQSKDVVRHPVVARIVEAY EEFEAKQQANKGRHDSQYRLADSPQADTAEGEPHGA >Mature_355_residues ASKLTTMNLYLEPADSRRLASLCGPFDDNIKQLERRIGVEISYRNNHFQIVGQPRNCLTANNLLKSLYVETAPVKGSTPD LEPEQVHIAIQEAIALEAEDEHEDLKEHYIKTRRGVIKPRNPNQSQYVVNIVRHDITFGIGPAGTGKTYLAVAAAVDALE RQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVERLIERSVIEIAPLAYMRGRTLNDAFIIL DESQNTTVEQMKMFLTRIGFNSKAVITGDITQIDLPKHQKSGLRHAIEVLGDVNEISFNFFQSKDVVRHPVVARIVEAYE EFEAKQQANKGRHDSQYRLADSPQADTAEGEPHGA
Specific function: Unknown
COG id: COG1702
COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phoH family [H]
Homologues:
Organism=Escherichia coli, GI145693103, Length=330, Percent_Identity=76.3636363636364, Blast_Score=499, Evalue=1e-142, Organism=Escherichia coli, GI1787257, Length=205, Percent_Identity=44.390243902439, Blast_Score=181, Evalue=6e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 40057; Mature: 39926
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASKLTTMNLYLEPADSRRLASLCGPFDDNIKQLERRIGVEISYRNNHFQIVGQPRNCLT CCCCEEEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHCCEEEEECCEEEEEECCCHHHH ANNLLKSLYVETAPVKGSTPDLEPEQVHIAIQEAIALEAEDEHEDLKEHYIKTRRGVIKP HHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCC RNPNQSQYVVNIVRHDITFGIGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEK CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVERLIERSVIEIAPLAYMRGRTLNDAFII CCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE LDESQNTTVEQMKMFLTRIGFNSKAVITGDITQIDLPKHQKSGLRHAIEVLGDVNEISFN EECCCCCHHHHHHHHHHHHCCCCCEEEECCCEEECCCCHHHHHHHHHHHHHCCHHHHHHH FFQSKDVVRHPVVARIVEAYEEFEAKQQANKGRHDSQYRLADSPQADTAEGEPHGA HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC >Mature Secondary Structure ASKLTTMNLYLEPADSRRLASLCGPFDDNIKQLERRIGVEISYRNNHFQIVGQPRNCLT CCCEEEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHCCEEEEECCEEEEEECCCHHHH ANNLLKSLYVETAPVKGSTPDLEPEQVHIAIQEAIALEAEDEHEDLKEHYIKTRRGVIKP HHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCC RNPNQSQYVVNIVRHDITFGIGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEK CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVERLIERSVIEIAPLAYMRGRTLNDAFII CCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE LDESQNTTVEQMKMFLTRIGFNSKAVITGDITQIDLPKHQKSGLRHAIEVLGDVNEISFN EECCCCCHHHHHHHHHHHHCCCCCEEEECCCEEECCCCHHHHHHHHHHHHHCCHHHHHHH FFQSKDVVRHPVVARIVEAYEEFEAKQQANKGRHDSQYRLADSPQADTAEGEPHGA HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]