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The map label for this gene is rpfG [H]

Identifier: 119774656

GI number: 119774656

Start: 1848494

End: 1849708

Strand: Direct

Name: rpfG [H]

Synonym: Sama_1519

Alternate gene names: 119774656

Gene position: 1848494-1849708 (Clockwise)

Preceding gene: 119774655

Following gene: 119774657

Centisome position: 42.93

GC content: 54.07

Gene sequence:

>1215_bases
TTGGCCAAAAACAACCCCATCTCCATTCCGGTCTCAGAACTCAGATTGGGACTCACAGTAAAGCTGCCGCTGTCCTGGAC
GGAGCACCCGTTTCTTATCAATCGGATTGAGCTCAAAGAGCAGGCCCAGATAGAAATGATTCGTGGCCTGAAGGTCCAAC
ACGTGTTGGTCCTGGCCGGTGCTGAGCTGCTGGATGAAGACGTACCCAAGGAAGAGGTGCCTATCGAAGATGATGGCTTT
GACGAAGACATGCCGGAGCGTGATGTTAAGCGCGAGGCCAGAGTCGCGATACGTAAAAGCCAGAAGCGTTTTTTGGACTG
TGTTAACGACAGCCGCAGCCTGGTGGGCAAACTTGGCAGCGACCCCGAAGGCGCTTACCGTTTGTCGGCCACCCTGGTTG
AGCAGATGCTGGAGCACTTGTTTGAGCAGGAGGCTGCGTATCTTGCGCTGGTGAGTGCGGGTGAGCAGGGCGCCTCGGTT
ACCCAGCATGGAATCAGTGTGGCCGTGTTGTCGCTGATGATTGCCAAGAGCATGGATATGCCCAAAAAAGACATGCGGGA
TATCGCACTGGGTGCGTTGCTGCACGACATAGGTAAGCTCAGGGTGCCGGACAATATCCGTCGAAAGCGTGGGCCGCTCA
CCACCCAGGAAATCAACTTCATGAACCAGCACCCCAACTATGGTCATGAGATGCTCAGTCGCAGTGGCTTGTTTCCCGAA
GAGGTGCTGCACATCATTCGCCATCATCACGAATTTATTGATGGCACGGGTTTTCCGGGTGGCCTGAATGGGAAAAAAAT
TCCCAGAACCACGCAAATCGTCACTTTGGCCAATGATTTTGAAGATCAAATGACCAGCCACAGCATTGCTTCCCCTCAAG
TCGCTTTGGGTTATTTATTCAAACACAGGGTAGGTAAACACGACGAAGCCCTCATTGCGACCCTGGTTAAGGTATTGGGC
ATTTATCCGCCCGGTACTCTGGTGCATCTCACCGACGGTTCTTTGGGAAAGGTGATGATGACCACCCGGGAAGTCAAGCA
GCCTCAGGTGTGGGCTTGCAGCGCCGCCGGAGGCGACCCCGGCCTCAGAATCTTGATGAATGAAGACGTCAGTATCGACA
GGGTCATCAAAATCGAAGAGCTCTCCGAGGCCGCTATTCGGGTACTCCAGGCCGATGCGCCCATCAGCTATTACTTTGCC
GCGCTCGAAGCTTGA

Upstream 100 bases:

>100_bases
TATGCATAATATGGATTTACGCTTTTAATTCATAGGATTGGCGCGTTATCAACCGCTATTCCGTCACCGAGGTTTTTACA
CCCCTCTTCGGAGGCTTTGA

Downstream 100 bases:

>100_bases
GTTTTCTGCACAGGTGCGTATTCTGAATCCCTCTTATTAGCCACTCTGGGATTAACCCGTTACTTCATGTCTGATTTTAA
AACCATTTCTATTATCGGCT

Product: putative metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MAKNNPISIPVSELRLGLTVKLPLSWTEHPFLINRIELKEQAQIEMIRGLKVQHVLVLAGAELLDEDVPKEEVPIEDDGF
DEDMPERDVKREARVAIRKSQKRFLDCVNDSRSLVGKLGSDPEGAYRLSATLVEQMLEHLFEQEAAYLALVSAGEQGASV
TQHGISVAVLSLMIAKSMDMPKKDMRDIALGALLHDIGKLRVPDNIRRKRGPLTTQEINFMNQHPNYGHEMLSRSGLFPE
EVLHIIRHHHEFIDGTGFPGGLNGKKIPRTTQIVTLANDFEDQMTSHSIASPQVALGYLFKHRVGKHDEALIATLVKVLG
IYPPGTLVHLTDGSLGKVMMTTREVKQPQVWACSAAGGDPGLRILMNEDVSIDRVIKIEELSEAAIRVLQADAPISYYFA
ALEA

Sequences:

>Translated_404_residues
MAKNNPISIPVSELRLGLTVKLPLSWTEHPFLINRIELKEQAQIEMIRGLKVQHVLVLAGAELLDEDVPKEEVPIEDDGF
DEDMPERDVKREARVAIRKSQKRFLDCVNDSRSLVGKLGSDPEGAYRLSATLVEQMLEHLFEQEAAYLALVSAGEQGASV
TQHGISVAVLSLMIAKSMDMPKKDMRDIALGALLHDIGKLRVPDNIRRKRGPLTTQEINFMNQHPNYGHEMLSRSGLFPE
EVLHIIRHHHEFIDGTGFPGGLNGKKIPRTTQIVTLANDFEDQMTSHSIASPQVALGYLFKHRVGKHDEALIATLVKVLG
IYPPGTLVHLTDGSLGKVMMTTREVKQPQVWACSAAGGDPGLRILMNEDVSIDRVIKIEELSEAAIRVLQADAPISYYFA
ALEA
>Mature_403_residues
AKNNPISIPVSELRLGLTVKLPLSWTEHPFLINRIELKEQAQIEMIRGLKVQHVLVLAGAELLDEDVPKEEVPIEDDGFD
EDMPERDVKREARVAIRKSQKRFLDCVNDSRSLVGKLGSDPEGAYRLSATLVEQMLEHLFEQEAAYLALVSAGEQGASVT
QHGISVAVLSLMIAKSMDMPKKDMRDIALGALLHDIGKLRVPDNIRRKRGPLTTQEINFMNQHPNYGHEMLSRSGLFPEE
VLHIIRHHHEFIDGTGFPGGLNGKKIPRTTQIVTLANDFEDQMTSHSIASPQVALGYLFKHRVGKHDEALIATLVKVLGI
YPPGTLVHLTDGSLGKVMMTTREVKQPQVWACSAAGGDPGLRILMNEDVSIDRVIKIEELSEAAIRVLQADAPISYYFAA
LEA

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 44800; Mature: 44669

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNNPISIPVSELRLGLTVKLPLSWTEHPFLINRIELKEQAQIEMIRGLKVQHVLVLAG
CCCCCCCCCCHHHHEECEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHC
AELLDEDVPKEEVPIEDDGFDEDMPERDVKREARVAIRKSQKRFLDCVNDSRSLVGKLGS
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
DPEGAYRLSATLVEQMLEHLFEQEAAYLALVSAGEQGASVTQHGISVAVLSLMIAKSMDM
CCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
PKKDMRDIALGALLHDIGKLRVPDNIRRKRGPLTTQEINFMNQHPNYGHEMLSRSGLFPE
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHH
EVLHIIRHHHEFIDGTGFPGGLNGKKIPRTTQIVTLANDFEDQMTSHSIASPQVALGYLF
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHH
KHRVGKHDEALIATLVKVLGIYPPGTLVHLTDGSLGKVMMTTREVKQPQVWACSAAGGDP
HHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCC
GLRILMNEDVSIDRVIKIEELSEAAIRVLQADAPISYYFAALEA
CEEEEEECCCCHHHEEEHHHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure 
AKNNPISIPVSELRLGLTVKLPLSWTEHPFLINRIELKEQAQIEMIRGLKVQHVLVLAG
CCCCCCCCCHHHHEECEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHC
AELLDEDVPKEEVPIEDDGFDEDMPERDVKREARVAIRKSQKRFLDCVNDSRSLVGKLGS
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
DPEGAYRLSATLVEQMLEHLFEQEAAYLALVSAGEQGASVTQHGISVAVLSLMIAKSMDM
CCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
PKKDMRDIALGALLHDIGKLRVPDNIRRKRGPLTTQEINFMNQHPNYGHEMLSRSGLFPE
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHH
EVLHIIRHHHEFIDGTGFPGGLNGKKIPRTTQIVTLANDFEDQMTSHSIASPQVALGYLF
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCHHHHHHHH
KHRVGKHDEALIATLVKVLGIYPPGTLVHLTDGSLGKVMMTTREVKQPQVWACSAAGGDP
HHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCC
GLRILMNEDVSIDRVIKIEELSEAAIRVLQADAPISYYFAALEA
CEEEEEECCCCHHHEEEHHHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]