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The map label for this gene is ybjY [C]

Identifier: 119774607

GI number: 119774607

Start: 1778560

End: 1779744

Strand: Direct

Name: ybjY [C]

Synonym: Sama_1470

Alternate gene names: 119774607

Gene position: 1778560-1779744 (Clockwise)

Preceding gene: 119774606

Following gene: 119774608

Centisome position: 41.3

GC content: 56.12

Gene sequence:

>1185_bases
ATGAGCAAGCAAACGCAACCAGGGCTGAAGGCCTTGTCACTCTGCATAGGTGCTGCGCTTTTTGTGGGTTGCGGCGACAG
TGCCACTGTGGCCGTCGCCGAGGGTCAACTGGTGCAACAGGTTGAGGTGACAGGGGTATTAACCTCCGCCGATACCCTGT
CGATGATGCCGCCAGCCATGCGCCGGGTGTGGCAATATCAGGTGAAAAGCCTCGCTCAGGAGGGCAAGGAAGTGAAGCAG
GGCTCAGTGGTGGCAAGGCTGGATACCTCAGAGCTGAATCAAAGGCTGCAGGTGAAAAGTGCTGAGCTCGAGGCAACTGT
GCAGGACATAGAAACCTCGCGCCTGAGAAACGCCAAAAAGCTTGAAGAGCTTAAACTCGAGCTTGCCGAAGCCAGGATGG
AAGAAGAAAAGGCGCTGCGTAAGTTTGAACTGTCGGACGACACAGTGGCGGCCATCGAAAAGGAAAAGTATCAGCGTGAT
GCGATTATCGCCACTGAGAAAGTAGCCCTTATCGAGCGCAAATTCACCCTGGAGCAGGAAAGCATCAAGGGCCGCATGGC
CATGCTTGATGGCGACCGGCAAAAGTTTGCGGCCGAAGTGGCGGCCCTCAAACAGGGCATAGCCGCGATGAGCCTCAAAG
CCCCCCGCGATGGCATGGTGGTGTATGGCACTGACCCCCAGGGTAATAAAATCAAGGAAGGCCAATCAGTCTTTGCCGGG
GACGCGGTGTTTTCCATGCCGGATCTGGATCGGATGCAGGTGGCCATGGCCATTCCTGAAGTAGAGGCCAACCGGGTACG
TGCAGGCCTCAGGGTAAAGATTCGATTGGATGCCAACCCGGAGCGGGTGTTTCATGGCACCTTGTCCGAAACCGGCGCCG
TGTTTCGCAGTAAAAATGACGATATCCCACTGGTGGTGTTTGATGCCGTGGCACGCTTTGACGAAGTGGACAAGGAGCTG
ATGCGCCCGGGGATGACCGCCAAAATCAATATCGACGTGGTACAGGAAAAGTCTGCGCTGCTGTTGCCTTTGGAAGCGGT
GCACTATGAAGAAGGTCGTCCCTTTGTGTGGCAATCGGGGCTTCTGGGTGACAGTCGCCAATACGTGGCGCTGGGCGATT
CAGGTCGCGACAGGGTGGTAGTGCTTTCCGGTTTGGCATTGGGGGATGAGGTGATTCTGAAATGA

Upstream 100 bases:

>100_bases
CCTGGGGGCAGAGCAAATGGTTCAGAGTCGAGGTGGCCTTGAGTGATACAGCGGGGCTTGAACTGTCGCCTGGAATGAGC
GTGATGGTGGAGGTACACCC

Downstream 100 bases:

>100_bases
AACGGCTAATGTTATTGCCTCTGCTGCCATTGGCGCTTTTGGCGGGCTGTCAGGAATCCACGGAAACCGCAGTTCTCACC
ATGAAAGTCAGCCGCAGCGA

Product: membrane-fusion protein

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; Secretion Protein HlyD; RND Family Efflux Transporter MFP Subunit; Multidrug Resistance Efflux Pump-Like Protein; Secretion Protein HlyD Family Protein; HlyD Family Secretion Protein; Auxiliary Transport Protein MFP Family; Efflux Transporter Rnd Family Mfp Subunit; Membrane-Fusion Protein-Like Protein

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSKQTQPGLKALSLCIGAALFVGCGDSATVAVAEGQLVQQVEVTGVLTSADTLSMMPPAMRRVWQYQVKSLAQEGKEVKQ
GSVVARLDTSELNQRLQVKSAELEATVQDIETSRLRNAKKLEELKLELAEARMEEEKALRKFELSDDTVAAIEKEKYQRD
AIIATEKVALIERKFTLEQESIKGRMAMLDGDRQKFAAEVAALKQGIAAMSLKAPRDGMVVYGTDPQGNKIKEGQSVFAG
DAVFSMPDLDRMQVAMAIPEVEANRVRAGLRVKIRLDANPERVFHGTLSETGAVFRSKNDDIPLVVFDAVARFDEVDKEL
MRPGMTAKINIDVVQEKSALLLPLEAVHYEEGRPFVWQSGLLGDSRQYVALGDSGRDRVVVLSGLALGDEVILK

Sequences:

>Translated_394_residues
MSKQTQPGLKALSLCIGAALFVGCGDSATVAVAEGQLVQQVEVTGVLTSADTLSMMPPAMRRVWQYQVKSLAQEGKEVKQ
GSVVARLDTSELNQRLQVKSAELEATVQDIETSRLRNAKKLEELKLELAEARMEEEKALRKFELSDDTVAAIEKEKYQRD
AIIATEKVALIERKFTLEQESIKGRMAMLDGDRQKFAAEVAALKQGIAAMSLKAPRDGMVVYGTDPQGNKIKEGQSVFAG
DAVFSMPDLDRMQVAMAIPEVEANRVRAGLRVKIRLDANPERVFHGTLSETGAVFRSKNDDIPLVVFDAVARFDEVDKEL
MRPGMTAKINIDVVQEKSALLLPLEAVHYEEGRPFVWQSGLLGDSRQYVALGDSGRDRVVVLSGLALGDEVILK
>Mature_393_residues
SKQTQPGLKALSLCIGAALFVGCGDSATVAVAEGQLVQQVEVTGVLTSADTLSMMPPAMRRVWQYQVKSLAQEGKEVKQG
SVVARLDTSELNQRLQVKSAELEATVQDIETSRLRNAKKLEELKLELAEARMEEEKALRKFELSDDTVAAIEKEKYQRDA
IIATEKVALIERKFTLEQESIKGRMAMLDGDRQKFAAEVAALKQGIAAMSLKAPRDGMVVYGTDPQGNKIKEGQSVFAGD
AVFSMPDLDRMQVAMAIPEVEANRVRAGLRVKIRLDANPERVFHGTLSETGAVFRSKNDDIPLVVFDAVARFDEVDKELM
RPGMTAKINIDVVQEKSALLLPLEAVHYEEGRPFVWQSGLLGDSRQYVALGDSGRDRVVVLSGLALGDEVILK

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43246; Mature: 43115

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQTQPGLKALSLCIGAALFVGCGDSATVAVAEGQLVQQVEVTGVLTSADTLSMMPPAM
CCCCCCCHHHHHHHHHHHHHHEECCCCCEEEEECCCHHHEEEEEEEEECCCHHHCCCHHH
RRVWQYQVKSLAQEGKEVKQGSVVARLDTSELNQRLQVKSAELEATVQDIETSRLRNAKK
HHHHHHHHHHHHHCCHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEELKLELAEARMEEEKALRKFELSDDTVAAIEKEKYQRDAIIATEKVALIERKFTLEQE
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCHH
SIKGRMAMLDGDRQKFAAEVAALKQGIAAMSLKAPRDGMVVYGTDPQGNKIKEGQSVFAG
HHCCEEEEECCCHHHHHHHHHHHHHCHHHEEECCCCCCEEEECCCCCCCCCCCCCCEEEC
DAVFSMPDLDRMQVAMAIPEVEANRVRAGLRVKIRLDANPERVFHGTLSETGAVFRSKND
CCEECCCCCHHHHHHHHCCCCCHHHCCCCEEEEEEECCCCCCEEECCHHHCCHHHCCCCC
DIPLVVFDAVARFDEVDKELMRPGMTAKINIDVVQEKSALLLPLEAVHYEEGRPFVWQSG
CCCEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEHHHHEECCCCCEEEECC
LLGDSRQYVALGDSGRDRVVVLSGLALGDEVILK
CCCCCCCEEEECCCCCCEEEEEECCCCCCHHHCC
>Mature Secondary Structure 
SKQTQPGLKALSLCIGAALFVGCGDSATVAVAEGQLVQQVEVTGVLTSADTLSMMPPAM
CCCCCCHHHHHHHHHHHHHHEECCCCCEEEEECCCHHHEEEEEEEEECCCHHHCCCHHH
RRVWQYQVKSLAQEGKEVKQGSVVARLDTSELNQRLQVKSAELEATVQDIETSRLRNAKK
HHHHHHHHHHHHHCCHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEELKLELAEARMEEEKALRKFELSDDTVAAIEKEKYQRDAIIATEKVALIERKFTLEQE
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCHH
SIKGRMAMLDGDRQKFAAEVAALKQGIAAMSLKAPRDGMVVYGTDPQGNKIKEGQSVFAG
HHCCEEEEECCCHHHHHHHHHHHHHCHHHEEECCCCCCEEEECCCCCCCCCCCCCCEEEC
DAVFSMPDLDRMQVAMAIPEVEANRVRAGLRVKIRLDANPERVFHGTLSETGAVFRSKND
CCEECCCCCHHHHHHHHCCCCCHHHCCCCEEEEEEECCCCCCEEECCHHHCCHHHCCCCC
DIPLVVFDAVARFDEVDKELMRPGMTAKINIDVVQEKSALLLPLEAVHYEEGRPFVWQSG
CCCEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEHHHHEECCCCCEEEECC
LLGDSRQYVALGDSGRDRVVVLSGLALGDEVILK
CCCCCCCEEEECCCCCCEEEEEECCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA