| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774591
Identifier: 119774591
GI number: 119774591
Start: 1764537
End: 1765565
Strand: Direct
Name: 119774591
Synonym: Sama_1454
Alternate gene names: NA
Gene position: 1764537-1765565 (Clockwise)
Preceding gene: 119774590
Following gene: 119774592
Centisome position: 40.98
GC content: 57.53
Gene sequence:
>1029_bases ATGACAATCCCTCTGGAGATTGAGTCAAGGGAGGGATCCGGGATTAAATCGCTTCCGGGTGTTACCGAAGAGGTGCTGGC ATTTATCGCCGATACGGGGCTTTTCGCCGATGGGTATCGCCTAAAGCCTTTGACCCGCGGCCTCAGCAATCATAACCTGG CGCTCTTTGCCCGCGAAGGCGCCTATGTCCTTCGGGTGAACCGTGATGAGAGCAGCGCCTTTTGTCAGCGGGCCTTTGAA GCCGAGAACTGGCGCCTGGCAGCGTCAGCGGGACTTGCCCCGACCTTGGTGGCCCAAAGCATTGATGGTCGCTGCTATCT CTCGCCTTTATTGGAGGACGGCGGCTGGCAACAGCGTTATCAGGAAGTCCCTCTGAGTCAAATCACCTGTGACGCGGCTT TTTTTACATCGCCCGGTCAAACACATGCCGGGAGTGACAGGGAGCCGGATGGTCTCACACACACGACCAGGCTGCTGCTC GACCTGCTGCTGGGATTGCAGGCTCTACCTGTGCCCGCGAATGTGAAGGGTTTTACCACCCAGTGGCAGGATTATGAGAC GGCGTTGGATGCGAGCCAATCGCACTGGGCCCGCAATCCCCGCTGGCAGGAGGCCTATCAGGCACTGGCGGCAGAATTTA CCGAGGTCGAGGCTGCCATGGCGCGCCTCGATGCGATGGGACTTTCTTGCCAGTACAGTCATCGGGATCTCACACCCCAT AATTTACTTTGCCACCAGGGCAAATTGTTTTGCATTGATTTCGAATATGCCTGCGCCTCGCACCCCCTTTGGGATCTCGC CGCTGTGCTGGCAAGCCACAATTTGCCGGGGCGAGAGCGCCGTGACCTGATGGACGCCTACCTTTATGCCCATCCGCAGC TGGAGTCCTCCATGTCATCAAGGGTTGTGGATGCGGTGGCGCTTCATTGGTATTTCGGGGCCATCTGGGCGCTGCTGATG GCTGGGCAATCTGGGGACGACGACTATCTTTGCTGGTTTCACAGATACTTACAATTGGCCAAGAGTTGA
Upstream 100 bases:
>100_bases CCCTGCTGTTTGTGTTTTACGTGGGGCTGGCGGTGGCTGGTTATTTTGTATGGCGTGCTGCTGCGGCCGAGCAGCGTCCC CCTGAGCTGGCGCTTAATTC
Downstream 100 bases:
>100_bases CGCCTTGTCCATTTCCGCTGGCCCTTGTTACCCTTCGCTAAGCCATAACAGAAAAGGACATCTATGAAACGTGCTCTGGC AGTAATGGGTTTGGCGCTTT
Product: aminoglycoside phosphotransferase
Products: NA
Alternate protein names: Phosphotransferase Family Protein
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MTIPLEIESREGSGIKSLPGVTEEVLAFIADTGLFADGYRLKPLTRGLSNHNLALFAREGAYVLRVNRDESSAFCQRAFE AENWRLAASAGLAPTLVAQSIDGRCYLSPLLEDGGWQQRYQEVPLSQITCDAAFFTSPGQTHAGSDREPDGLTHTTRLLL DLLLGLQALPVPANVKGFTTQWQDYETALDASQSHWARNPRWQEAYQALAAEFTEVEAAMARLDAMGLSCQYSHRDLTPH NLLCHQGKLFCIDFEYACASHPLWDLAAVLASHNLPGRERRDLMDAYLYAHPQLESSMSSRVVDAVALHWYFGAIWALLM AGQSGDDDYLCWFHRYLQLAKS
Sequences:
>Translated_342_residues MTIPLEIESREGSGIKSLPGVTEEVLAFIADTGLFADGYRLKPLTRGLSNHNLALFAREGAYVLRVNRDESSAFCQRAFE AENWRLAASAGLAPTLVAQSIDGRCYLSPLLEDGGWQQRYQEVPLSQITCDAAFFTSPGQTHAGSDREPDGLTHTTRLLL DLLLGLQALPVPANVKGFTTQWQDYETALDASQSHWARNPRWQEAYQALAAEFTEVEAAMARLDAMGLSCQYSHRDLTPH NLLCHQGKLFCIDFEYACASHPLWDLAAVLASHNLPGRERRDLMDAYLYAHPQLESSMSSRVVDAVALHWYFGAIWALLM AGQSGDDDYLCWFHRYLQLAKS >Mature_341_residues TIPLEIESREGSGIKSLPGVTEEVLAFIADTGLFADGYRLKPLTRGLSNHNLALFAREGAYVLRVNRDESSAFCQRAFEA ENWRLAASAGLAPTLVAQSIDGRCYLSPLLEDGGWQQRYQEVPLSQITCDAAFFTSPGQTHAGSDREPDGLTHTTRLLLD LLLGLQALPVPANVKGFTTQWQDYETALDASQSHWARNPRWQEAYQALAAEFTEVEAAMARLDAMGLSCQYSHRDLTPHN LLCHQGKLFCIDFEYACASHPLWDLAAVLASHNLPGRERRDLMDAYLYAHPQLESSMSSRVVDAVALHWYFGAIWALLMA GQSGDDDYLCWFHRYLQLAKS
Specific function: Unknown
COG id: COG0510
COG function: function code M; Predicted choline kinase involved in LPS biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38114; Mature: 37983
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS00109 PROTEIN_KINASE_TYR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIPLEIESREGSGIKSLPGVTEEVLAFIADTGLFADGYRLKPLTRGLSNHNLALFAREG CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCHHHCCCCCCCEEEEEECC AYVLRVNRDESSAFCQRAFEAENWRLAASAGLAPTLVAQSIDGRCYLSPLLEDGGWQQRY EEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCEEEEHHHCCCCHHHHH QEVPLSQITCDAAFFTSPGQTHAGSDREPDGLTHTTRLLLDLLLGLQALPVPANVKGFTT HHCCHHHEEECHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC QWQDYETALDASQSHWARNPRWQEAYQALAAEFTEVEAAMARLDAMGLSCQYSHRDLTPH CHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH NLLCHQGKLFCIDFEYACASHPLWDLAAVLASHNLPGRERRDLMDAYLYAHPQLESSMSS HHHCCCCCEEEEEEHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHH RVVDAVALHWYFGAIWALLMAGQSGDDDYLCWFHRYLQLAKS HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure TIPLEIESREGSGIKSLPGVTEEVLAFIADTGLFADGYRLKPLTRGLSNHNLALFAREG CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCHHHCCCCCCCEEEEEECC AYVLRVNRDESSAFCQRAFEAENWRLAASAGLAPTLVAQSIDGRCYLSPLLEDGGWQQRY EEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCEEEEHHHCCCCHHHHH QEVPLSQITCDAAFFTSPGQTHAGSDREPDGLTHTTRLLLDLLLGLQALPVPANVKGFTT HHCCHHHEEECHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC QWQDYETALDASQSHWARNPRWQEAYQALAAEFTEVEAAMARLDAMGLSCQYSHRDLTPH CHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH NLLCHQGKLFCIDFEYACASHPLWDLAAVLASHNLPGRERRDLMDAYLYAHPQLESSMSS HHHCCCCCEEEEEEHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHH RVVDAVALHWYFGAIWALLMAGQSGDDDYLCWFHRYLQLAKS HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA