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The map label for this gene is csgD [H]

Identifier: 119774583

GI number: 119774583

Start: 1756407

End: 1757039

Strand: Direct

Name: csgD [H]

Synonym: Sama_1446

Alternate gene names: 119774583

Gene position: 1756407-1757039 (Clockwise)

Preceding gene: 119774582

Following gene: 119774585

Centisome position: 40.79

GC content: 49.13

Gene sequence:

>633_bases
ATGTTCAAGATAATACATTGGATGGTGGTATCTCGTTCACACTTGTTGGGTGATTTACTGGACTGCCGTTGGCCACAGGA
ATTTTTGGTCAAGCTGACCAAAGCGGCGCCAGAAGAGATGTGTAACAAGTTGCACCTCAGTCAGGTTTCTCTGGTGGTGA
TTGACCTGGCCTCGGTAGACTTGCAAAAGGCCTATCAGCTGCAGAAGCATATCGAAAGGGAATATTCGTCCATTAAGGTG
GTGTTTATCCACTTCCCCCGTCAAACCGACGCGCGTTTCCTCGTTAATCAATCCGTTACAGCAGGCGTATTTTTCTTTGA
CGCCAGTCTGGCCGATATCGGTGAAGGTCTTGGCGAAATCCTGAAAGGTCGCAGCCAAATTCCGGCACAGTTACTGCGCA
GCAGCAATGGTGAAGATTACGAAGAAGACAGTGAAAAACTGACCATTCGTGAACGTGAAGTGCTGCAGGCACTCTTGTCG
GGGAGCACTAATCTGGACATTGCCAATCGGCTTTTCGTCAGTGAAAGCACCATCAAAACCCATCTTTACCGTGCATTTCG
CAAGATTGGCGTTTCCAGTCGCGGTCAGGCTATCGCCTGGGCTCAAACCCATTTGCACGAAGTGCATGTTTGA

Upstream 100 bases:

>100_bases
GGGGTAGATACTGCCGTTTAATTGGTGTAACTTGTGCGTGTTCTGCTTGGAGATTAGCGCAGAGCAGGTTTAGCCAGAAT
TAACACGGAGGTTGAGCGTT

Downstream 100 bases:

>100_bases
CGGTGTTGGTGTTTTTGTAGAGTCATCGATGCAGCTGAGCAATAAGAAAGGCGTCCAGGACGCCTTTTTTATTGTTTCTG
ACTCAGTTACCCGAGCCAGG

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MFKIIHWMVVSRSHLLGDLLDCRWPQEFLVKLTKAAPEEMCNKLHLSQVSLVVIDLASVDLQKAYQLQKHIEREYSSIKV
VFIHFPRQTDARFLVNQSVTAGVFFFDASLADIGEGLGEILKGRSQIPAQLLRSSNGEDYEEDSEKLTIREREVLQALLS
GSTNLDIANRLFVSESTIKTHLYRAFRKIGVSSRGQAIAWAQTHLHEVHV

Sequences:

>Translated_210_residues
MFKIIHWMVVSRSHLLGDLLDCRWPQEFLVKLTKAAPEEMCNKLHLSQVSLVVIDLASVDLQKAYQLQKHIEREYSSIKV
VFIHFPRQTDARFLVNQSVTAGVFFFDASLADIGEGLGEILKGRSQIPAQLLRSSNGEDYEEDSEKLTIREREVLQALLS
GSTNLDIANRLFVSESTIKTHLYRAFRKIGVSSRGQAIAWAQTHLHEVHV
>Mature_210_residues
MFKIIHWMVVSRSHLLGDLLDCRWPQEFLVKLTKAAPEEMCNKLHLSQVSLVVIDLASVDLQKAYQLQKHIEREYSSIKV
VFIHFPRQTDARFLVNQSVTAGVFFFDASLADIGEGLGEILKGRSQIPAQLLRSSNGEDYEEDSEKLTIREREVLQALLS
GSTNLDIANRLFVSESTIKTHLYRAFRKIGVSSRGQAIAWAQTHLHEVHV

Specific function: The master regulator for adhesive curli fimbriae expression; necessary for transcription of the csgBAC/ymdA operon. Plays a positive role in biofilm formation. May have the capability to respond to starvation and/or high cell density by activating csgBA t

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787277, Length=165, Percent_Identity=32.1212121212121, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 23872; Mature: 23872

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKIIHWMVVSRSHLLGDLLDCRWPQEFLVKLTKAAPEEMCNKLHLSQVSLVVIDLASVD
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEHHHHH
LQKAYQLQKHIEREYSSIKVVFIHFPRQTDARFLVNQSVTAGVFFFDASLADIGEGLGEI
HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHCCCCCCEEEEEECHHHHHHHHHHHH
LKGRSQIPAQLLRSSNGEDYEEDSEKLTIREREVLQALLSGSTNLDIANRLFVSESTIKT
HHCCCCCHHHHHHCCCCCCCCCCHHHEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HLYRAFRKIGVSSRGQAIAWAQTHLHEVHV
HHHHHHHHHCCCCCCCEEEHHHHHHHHCCC
>Mature Secondary Structure
MFKIIHWMVVSRSHLLGDLLDCRWPQEFLVKLTKAAPEEMCNKLHLSQVSLVVIDLASVD
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEHHHHH
LQKAYQLQKHIEREYSSIKVVFIHFPRQTDARFLVNQSVTAGVFFFDASLADIGEGLGEI
HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHCCCCCCEEEEEECHHHHHHHHHHHH
LKGRSQIPAQLLRSSNGEDYEEDSEKLTIREREVLQALLSGSTNLDIANRLFVSESTIKT
HHCCCCCHHHHHHCCCCCCCCCCHHHEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
HLYRAFRKIGVSSRGQAIAWAQTHLHEVHV
HHHHHHHHHCCCCCCCEEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8817489; 8905232; 9278503 [H]