| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is hemH [H]
Identifier: 119774453
GI number: 119774453
Start: 1599916
End: 1600899
Strand: Direct
Name: hemH [H]
Synonym: Sama_1316
Alternate gene names: 119774453
Gene position: 1599916-1600899 (Clockwise)
Preceding gene: 119774452
Following gene: 119774454
Centisome position: 37.15
GC content: 55.18
Gene sequence:
>984_bases ATGTTTGGAGTACTCCTAGTCAATCTGGGCACCCCAGATGCCCCCGACGCCCCTTCTGTGCGCCGTTTTTTAAAGCAATT TTTGAGCGACCCCAGGGTAGTGGATTTATCCCCCTGGATTTGGAAACCGATTCTGAATGGCATCATTCTTAATACCCGTC CTGCCAAAGTCGCCAAACTGTATCAAAGCATCTGGTGGGATGAGGGCTCACCGCTGATGGTCATTAGCCAGCGTCAGCGG GAGAAGCTTGCCATCGAACTGAGCAGCCTCTACGGCCATGAAGTCCCGGTTGAACTTGGGATGAGTTATGGCTCACCGTC GCTGAGCCAGGGGTTGGAGCGCCTCAAAGCCCAGGGTATAGACCGTGTCGTGGTGTTGCCTTTGTATCCTCAGTATTCCT GCTCTACGGTGGCCAGTGTGTTCGATGGGGTTGCCGGCGTGCTCAAATCCTGGCGACGCCTGCCAGACTGGCGCATGGTG CGCGAGTATTACCGTCATCCGCTGTATATACGGGCGCTGGCTGATTCTGTTCGTCGTCTTTGGGACGCTGACGGTAAAGC TGAACTCTTACTGATGTCGTTCCACGGCGTGCCGCTGAGGTACATAACCGAAGGTGATCCCTATCAGGCCCAGTGCCAGG AAACCGCAAGGCTCGTTGCCAAAGACCTTGGCCTTGGCAATGACGAATGGCAGGTCTGTTTTCAGTCGCGCTTTGGCAAA GAAGAGTGGCTGACTCCCTATACCGACGAGTTGCTCGAGAGCCTGCCGGGCAAGGGCGTTAAGAAGGTGGACATTATGTG TCCTGCTTTTTCGGCAGATTGCCTGGAAACGCTCGAAGAGATTGCCGAAGGGGGTAAAGAGTCCTTCATCCACGCCGGTG GCGAGCAATATAGAGTCATTCCCTGTCTGAACGACGACGATGGCCATATCCGATTGCTGGCTGAACTGGTCAGAGAGCAG AGCCTCGGCTGGCAAGTTGGCTGA
Upstream 100 bases:
>100_bases GTAGAAAAGCCTGTGAAAACAGGCTTTTTTGTTTTTTGGCCTATGATAGGCTAAACCAAAGTTTGCCAATTTGAGGTGAG ATGTGAGCCAGGAAAAGCCA
Downstream 100 bases:
>100_bases TGGCGCTGCGCTCATCACTGGTCAGTATCTTAAAATATGATAGAATCTGCCGCCTTTGAGCCAGGCGGCGGTATTTGCAG CTTTCTTTTGCGTGGATCTC
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase 1; Protoheme ferro-lyase 1 [H]
Number of amino acids: Translated: 327; Mature: 327
Protein sequence:
>327_residues MFGVLLVNLGTPDAPDAPSVRRFLKQFLSDPRVVDLSPWIWKPILNGIILNTRPAKVAKLYQSIWWDEGSPLMVISQRQR EKLAIELSSLYGHEVPVELGMSYGSPSLSQGLERLKAQGIDRVVVLPLYPQYSCSTVASVFDGVAGVLKSWRRLPDWRMV REYYRHPLYIRALADSVRRLWDADGKAELLLMSFHGVPLRYITEGDPYQAQCQETARLVAKDLGLGNDEWQVCFQSRFGK EEWLTPYTDELLESLPGKGVKKVDIMCPAFSADCLETLEEIAEGGKESFIHAGGEQYRVIPCLNDDDGHIRLLAELVREQ SLGWQVG
Sequences:
>Translated_327_residues MFGVLLVNLGTPDAPDAPSVRRFLKQFLSDPRVVDLSPWIWKPILNGIILNTRPAKVAKLYQSIWWDEGSPLMVISQRQR EKLAIELSSLYGHEVPVELGMSYGSPSLSQGLERLKAQGIDRVVVLPLYPQYSCSTVASVFDGVAGVLKSWRRLPDWRMV REYYRHPLYIRALADSVRRLWDADGKAELLLMSFHGVPLRYITEGDPYQAQCQETARLVAKDLGLGNDEWQVCFQSRFGK EEWLTPYTDELLESLPGKGVKKVDIMCPAFSADCLETLEEIAEGGKESFIHAGGEQYRVIPCLNDDDGHIRLLAELVREQ SLGWQVG >Mature_327_residues MFGVLLVNLGTPDAPDAPSVRRFLKQFLSDPRVVDLSPWIWKPILNGIILNTRPAKVAKLYQSIWWDEGSPLMVISQRQR EKLAIELSSLYGHEVPVELGMSYGSPSLSQGLERLKAQGIDRVVVLPLYPQYSCSTVASVFDGVAGVLKSWRRLPDWRMV REYYRHPLYIRALADSVRRLWDADGKAELLLMSFHGVPLRYITEGDPYQAQCQETARLVAKDLGLGNDEWQVCFQSRFGK EEWLTPYTDELLESLPGKGVKKVDIMCPAFSADCLETLEEIAEGGKESFIHAGGEQYRVIPCLNDDDGHIRLLAELVREQ SLGWQVG
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=331, Percent_Identity=27.190332326284, Blast_Score=111, Evalue=7e-25, Organism=Homo sapiens, GI60499025, Length=331, Percent_Identity=27.190332326284, Blast_Score=111, Evalue=7e-25, Organism=Escherichia coli, GI1786681, Length=315, Percent_Identity=52.3809523809524, Blast_Score=319, Evalue=2e-88, Organism=Saccharomyces cerevisiae, GI6324750, Length=328, Percent_Identity=24.390243902439, Blast_Score=85, Evalue=2e-17, Organism=Drosophila melanogaster, GI17864156, Length=334, Percent_Identity=25.748502994012, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI24651774, Length=266, Percent_Identity=25.9398496240602, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI45552018, Length=169, Percent_Identity=26.0355029585799, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 36936; Mature: 36936
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGVLLVNLGTPDAPDAPSVRRFLKQFLSDPRVVDLSPWIWKPILNGIILNTRPAKVAKL CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHCCEEECCCHHHHHHH YQSIWWDEGSPLMVISQRQREKLAIELSSLYGHEVPVELGMSYGSPSLSQGLERLKAQGI HHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHCCC DRVVVLPLYPQYSCSTVASVFDGVAGVLKSWRRLPDWRMVREYYRHPLYIRALADSVRRL CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH WDADGKAELLLMSFHGVPLRYITEGDPYQAQCQETARLVAKDLGLGNDEWQVCFQSRFGK HCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC EEWLTPYTDELLESLPGKGVKKVDIMCPAFSADCLETLEEIAEGGKESFIHAGGEQYRVI CCCCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHEECCCCCEEEE PCLNDDDGHIRLLAELVREQSLGWQVG EECCCCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MFGVLLVNLGTPDAPDAPSVRRFLKQFLSDPRVVDLSPWIWKPILNGIILNTRPAKVAKL CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHCCEEECCCHHHHHHH YQSIWWDEGSPLMVISQRQREKLAIELSSLYGHEVPVELGMSYGSPSLSQGLERLKAQGI HHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHCCC DRVVVLPLYPQYSCSTVASVFDGVAGVLKSWRRLPDWRMVREYYRHPLYIRALADSVRRL CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH WDADGKAELLLMSFHGVPLRYITEGDPYQAQCQETARLVAKDLGLGNDEWQVCFQSRFGK HCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC EEWLTPYTDELLESLPGKGVKKVDIMCPAFSADCLETLEEIAEGGKESFIHAGGEQYRVI CCCCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHEECCCCCEEEE PCLNDDDGHIRLLAELVREQSLGWQVG EECCCCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]