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The map label for this gene is ybcJ [H]

Identifier: 119774401

GI number: 119774401

Start: 1551255

End: 1551485

Strand: Direct

Name: ybcJ [H]

Synonym: Sama_1264

Alternate gene names: 119774401

Gene position: 1551255-1551485 (Clockwise)

Preceding gene: 119774400

Following gene: 119774402

Centisome position: 36.02

GC content: 54.55

Gene sequence:

>231_bases
TTGAGCGGTTCAGCATCCAGCCTCACCCTGCATGCGGGTGAAGACTATATCGAGCTTTATAAAGTACTTAAAGTAGAGGG
CATGACCGGGGACGGCGCCGAAGCCAAGCGTGTAATTGCCGAAGGCATGGTGTTGGTGAACGGTGAAGTGGAAACCCGCA
AGCGTAAGAAACTGGTTGCCGGTGACTCGGTCACCTTCAATGGCGAAACCGTCCAGATCCTGGCGGGCTAA

Upstream 100 bases:

>100_bases
GCTGGCCGATGAGCGGGGCGATGTAAATTAACCGCAACTTCACGCTACGCGCAGCGGTTATGTGTATAATGCAGCGGTTT
ATAATCAGTGGAGAGCGGCA

Downstream 100 bases:

>100_bases
GGAGACAGATAATGCATTTTCCAGAAGATGATAACGGCCAGATGCTCAAAGCAATGCACGAGTCCGGGATTGACTTGACC
AAGCCACTGGATGTGGACTT

Product: RNA-binding S4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MSGSASSLTLHAGEDYIELYKVLKVEGMTGDGAEAKRVIAEGMVLVNGEVETRKRKKLVAGDSVTFNGETVQILAG

Sequences:

>Translated_76_residues
MSGSASSLTLHAGEDYIELYKVLKVEGMTGDGAEAKRVIAEGMVLVNGEVETRKRKKLVAGDSVTFNGETVQILAG
>Mature_75_residues
SGSASSLTLHAGEDYIELYKVLKVEGMTGDGAEAKRVIAEGMVLVNGEVETRKRKKLVAGDSVTFNGETVQILAG

Specific function: Its structure and the presence of conserved basic residues indicates that it probably binds RNA [H]

COG id: COG2501

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081752, Length=62, Percent_Identity=53.2258064516129, Blast_Score=69, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8027; Mature: 7896

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSASSLTLHAGEDYIELYKVLKVEGMTGDGAEAKRVIAEGMVLVNGEVETRKRKKLVA
CCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCEEEC
GDSVTFNGETVQILAG
CCCEEECCCEEEEEEC
>Mature Secondary Structure 
SGSASSLTLHAGEDYIELYKVLKVEGMTGDGAEAKRVIAEGMVLVNGEVETRKRKKLVA
CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCEEEC
GDSVTFNGETVQILAG
CCCEEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1748668; 7567469 [H]