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The map label for this gene is yhbU [H]

Identifier: 119774135

GI number: 119774135

Start: 1210171

End: 1211172

Strand: Reverse

Name: yhbU [H]

Synonym: Sama_0998

Alternate gene names: 119774135

Gene position: 1211172-1210171 (Counterclockwise)

Preceding gene: 119774139

Following gene: 119774134

Centisome position: 28.13

GC content: 59.08

Gene sequence:

>1002_bases
ATGGAGTTGTTGTGTCCGGCCGGCAATCTGGCCGCGCTCAAGGTCGCCCTCAATGCCGGGGCCGATGCGATTTACCTGGG
GCTGAAAGATGATACCAATGCCCGTTCTTTTGCCGGGCTGAACTTTACCCCTGAGCAAATGACCGAGGCCAGACGCCTCA
CCGCTGCGGCGGGGAAAAAGCTCTACCTCACCCTGAATACCTTTCCCAAACCCGGCGAAGAGCAGCGTTGGTATCAGGCG
GTGGATTTGGCGGCACGGTTAAAAGCCGATGCGCTGATCGTGGCCGATATTTCGTTGCTGGATTATGCCCACAGCCGCTA
TCCCAATCTGCCGCTGCATCTGTCGGTGCAGGCCAGCGCCACCAATCTGGGGGCCCTCACCCTCTACAAGGAGGCTTTCA
ATATAGAACGGGTGGTTTTGCCACGGGTGCTGTCGATGAAGCAGGTGCGGGATCTGGCCGCCGACACCCCGGTGGATTTG
GAAGTCTTTGCCTTTGGTAGCCTGTGCATCATGGCCGAAGGTCGCTGCCACCTGTCGTCTTATGTCACGGGCCAGTCGCC
CAACACGGGTGGGTCCTGCTCACCCGCCAAACATGTGCGCTGGCAGCAGCAGGGAGACCAGAGCCTGACCCGCCTCAACG
AAGTCTTAATTGATAAGGCCTCCCAGCATGAACAGATGGGCTATCCGGTGGTATGTAAGGGGCGTTTTATCGCCGAAGAC
AGCGATACCCCAGACTACCTGCTCGAGTCCCCCACCAGCCTCAATACCCTGAGTTTGCTGCCAGAGCTGGCACGGGCTGG
CGTGGTGTCGCTCAAGATTGAAGGACGCCAGCGCAGTCCTGCCTATGTGGAGCAGGTTACCCGAGTGTGGCGCGCCGCCA
TCGATACCTTTAAGCGCAACCCAGAGCAATATCAGGTTCAGGCCGACTGGGACAGGGCGCTGGGTAAATTATCCGAAGGC
CAAATCACCACGCTGGGCGCCTATGAGCGTCGCTGGCAGTAA

Upstream 100 bases:

>100_bases
ACGTGGCTTTTAGTTTCCGCCTCTTGTCTTACATCAAGTCCCGGGCGGACAAACATGGTTACACTGCGGGCGTTTTTGGA
TATTTGAAGAGTGTCACACT

Downstream 100 bases:

>100_bases
GGAACAAGCGTATGAAATCCAGTCTGGGTCCCCTGCTCTACTGTTGGGACAAAGCCAAAGTTTTTGAGTTTTACCGGGCA
ATAGCCCAAAGCGATATCGC

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MELLCPAGNLAALKVALNAGADAIYLGLKDDTNARSFAGLNFTPEQMTEARRLTAAAGKKLYLTLNTFPKPGEEQRWYQA
VDLAARLKADALIVADISLLDYAHSRYPNLPLHLSVQASATNLGALTLYKEAFNIERVVLPRVLSMKQVRDLAADTPVDL
EVFAFGSLCIMAEGRCHLSSYVTGQSPNTGGSCSPAKHVRWQQQGDQSLTRLNEVLIDKASQHEQMGYPVVCKGRFIAED
SDTPDYLLESPTSLNTLSLLPELARAGVVSLKIEGRQRSPAYVEQVTRVWRAAIDTFKRNPEQYQVQADWDRALGKLSEG
QITTLGAYERRWQ

Sequences:

>Translated_333_residues
MELLCPAGNLAALKVALNAGADAIYLGLKDDTNARSFAGLNFTPEQMTEARRLTAAAGKKLYLTLNTFPKPGEEQRWYQA
VDLAARLKADALIVADISLLDYAHSRYPNLPLHLSVQASATNLGALTLYKEAFNIERVVLPRVLSMKQVRDLAADTPVDL
EVFAFGSLCIMAEGRCHLSSYVTGQSPNTGGSCSPAKHVRWQQQGDQSLTRLNEVLIDKASQHEQMGYPVVCKGRFIAED
SDTPDYLLESPTSLNTLSLLPELARAGVVSLKIEGRQRSPAYVEQVTRVWRAAIDTFKRNPEQYQVQADWDRALGKLSEG
QITTLGAYERRWQ
>Mature_333_residues
MELLCPAGNLAALKVALNAGADAIYLGLKDDTNARSFAGLNFTPEQMTEARRLTAAAGKKLYLTLNTFPKPGEEQRWYQA
VDLAARLKADALIVADISLLDYAHSRYPNLPLHLSVQASATNLGALTLYKEAFNIERVVLPRVLSMKQVRDLAADTPVDL
EVFAFGSLCIMAEGRCHLSSYVTGQSPNTGGSCSPAKHVRWQQQGDQSLTRLNEVLIDKASQHEQMGYPVVCKGRFIAED
SDTPDYLLESPTSLNTLSLLPELARAGVVSLKIEGRQRSPAYVEQVTRVWRAAIDTFKRNPEQYQVQADWDRALGKLSEG
QITTLGAYERRWQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=333, Percent_Identity=59.4594594594595, Blast_Score=407, Evalue=1e-115,
Organism=Escherichia coli, GI1788397, Length=320, Percent_Identity=29.0625, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI87081910, Length=298, Percent_Identity=27.1812080536913, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 36797; Mature: 36797

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLCPAGNLAALKVALNAGADAIYLGLKDDTNARSFAGLNFTPEQMTEARRLTAAAGKK
CCEECCCCCEEEEEEEEECCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHCCCE
LYLTLNTFPKPGEEQRWYQAVDLAARLKADALIVADISLLDYAHSRYPNLPLHLSVQASA
EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEECC
TNLGALTLYKEAFNIERVVLPRVLSMKQVRDLAADTPVDLEVFAFGSLCIMAEGRCHLSS
CCCCHHEEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCEEEHH
YVTGQSPNTGGSCSPAKHVRWQQQGDQSLTRLNEVLIDKASQHEQMGYPVVCKGRFIAED
EECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEECCEEEECC
SDTPDYLLESPTSLNTLSLLPELARAGVVSLKIEGRQRSPAYVEQVTRVWRAAIDTFKRN
CCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
PEQYQVQADWDRALGKLSEGQITTLGAYERRWQ
CCEEEEEECHHHHHCCCCCCCEEEECCHHHCCC
>Mature Secondary Structure
MELLCPAGNLAALKVALNAGADAIYLGLKDDTNARSFAGLNFTPEQMTEARRLTAAAGKK
CCEECCCCCEEEEEEEEECCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHCCCE
LYLTLNTFPKPGEEQRWYQAVDLAARLKADALIVADISLLDYAHSRYPNLPLHLSVQASA
EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEECC
TNLGALTLYKEAFNIERVVLPRVLSMKQVRDLAADTPVDLEVFAFGSLCIMAEGRCHLSS
CCCCHHEEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCEEEHH
YVTGQSPNTGGSCSPAKHVRWQQQGDQSLTRLNEVLIDKASQHEQMGYPVVCKGRFIAED
EECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEECCEEEECC
SDTPDYLLESPTSLNTLSLLPELARAGVVSLKIEGRQRSPAYVEQVTRVWRAAIDTFKRN
CCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
PEQYQVQADWDRALGKLSEGQITTLGAYERRWQ
CCEEEEEECHHHHHCCCCCCCEEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]