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The map label for this gene is slyD [H]

Identifier: 119774041

GI number: 119774041

Start: 1091171

End: 1091782

Strand: Reverse

Name: slyD [H]

Synonym: Sama_0904

Alternate gene names: 119774041

Gene position: 1091782-1091171 (Counterclockwise)

Preceding gene: 119774048

Following gene: 119774040

Centisome position: 25.35

GC content: 53.1

Gene sequence:

>612_bases
ATGAAAATCACCAAGAACAGTGCGGTAACCATCCACTATCGCCTGAGCGACAGCCAGGGCCAGCTGATTGAAAGTTCCTT
CGAGGCCGATCCCATGGTGTACCTGCACGGTGCAGAGAACCTGATACCGGGTCTTGAAAATGCCCTGGAAGGTAAACTGG
CCGGTGATACCCTCGAAGTCACAGTAGACTGTGAACAAGCCTATGGCCCTTACCACGATGGCCTGCGTCAGGAAGTGCCA
CTGGAAGCCTTTGGCGATATTCAGGACATAGTGCCCGGTATGCGCTTCATTGCAGAAACTGAAATGGGCCAGCGCCCTGT
GCAAGTTACTGAAGTGCTTGAAAATACCGTTGTAGTTGACGGTAACCACCCACTTGCTGGCCAGTCACTGACCTTCTTTG
TTGAAGTAAAAGATGTACGTTTGGCGACCGATGAAGAAGTTGCCCATGGTCATATCCATGCCCACGGTGGCTGTGGTGGT
CATCATCACCATCATGACGAAGGTGGATGCTGTGGCGGCCATGATCATGACCATGGTCACTGCGAGCATGACTCAGAGAA
AGAAGCCAAACCCGGCTGTGATGGTAACGGCGGCTGTGGCTGTCGCGGCTAA

Upstream 100 bases:

>100_bases
CCAGAAAAAAGTGGCCTAAGTTAACAATCACTGATGTAAATCATCGCCTGAGCATAAAAAGCAGAGTATTATGCGCGCAC
ATTGCGAATATGGAGGCAGT

Downstream 100 bases:

>100_bases
GCTGTAACGCTTTCTTATTAAATTTATGCAAAACGCCGATCTCTTTTGAATCGGCGTTTTCTTTTGGCCTAATATAAAGC
CCGGCACGGACTGCCGATAT

Product: peptidyl-prolyl cis-trans isomerase SlyD

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MKITKNSAVTIHYRLSDSQGQLIESSFEADPMVYLHGAENLIPGLENALEGKLAGDTLEVTVDCEQAYGPYHDGLRQEVP
LEAFGDIQDIVPGMRFIAETEMGQRPVQVTEVLENTVVVDGNHPLAGQSLTFFVEVKDVRLATDEEVAHGHIHAHGGCGG
HHHHHDEGGCCGGHDHDHGHCEHDSEKEAKPGCDGNGGCGCRG

Sequences:

>Translated_203_residues
MKITKNSAVTIHYRLSDSQGQLIESSFEADPMVYLHGAENLIPGLENALEGKLAGDTLEVTVDCEQAYGPYHDGLRQEVP
LEAFGDIQDIVPGMRFIAETEMGQRPVQVTEVLENTVVVDGNHPLAGQSLTFFVEVKDVRLATDEEVAHGHIHAHGGCGG
HHHHHDEGGCCGGHDHDHGHCEHDSEKEAKPGCDGNGGCGCRG
>Mature_203_residues
MKITKNSAVTIHYRLSDSQGQLIESSFEADPMVYLHGAENLIPGLENALEGKLAGDTLEVTVDCEQAYGPYHDGLRQEVP
LEAFGDIQDIVPGMRFIAETEMGQRPVQVTEVLENTVVVDGNHPLAGQSLTFFVEVKDVRLATDEEVAHGHIHAHGGCGG
HHHHHDEGGCCGGHDHDHGHCEHDSEKEAKPGCDGNGGCGCRG

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=148, Percent_Identity=46.6216216216216, Blast_Score=127, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 21843; Mature: 21843

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50059 FKBP_PPIASE ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITKNSAVTIHYRLSDSQGQLIESSFEADPMVYLHGAENLIPGLENALEGKLAGDTLEV
CEECCCCEEEEEEEECCCCCCHHHHCCCCCCEEEEECCCHHCCCHHHHHCCCCCCCEEEE
TVDCEQAYGPYHDGLRQEVPLEAFGDIQDIVPGMRFIAETEMGQRPVQVTEVLENTVVVD
EEEHHHHCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEE
GNHPLAGQSLTFFVEVKDVRLATDEEVAHGHIHAHGGCGGHHHHHDEGGCCGGHDHDHGH
CCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
CEHDSEKEAKPGCDGNGGCGCRG
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKITKNSAVTIHYRLSDSQGQLIESSFEADPMVYLHGAENLIPGLENALEGKLAGDTLEV
CEECCCCEEEEEEEECCCCCCHHHHCCCCCCEEEEECCCHHCCCHHHHHCCCCCCCEEEE
TVDCEQAYGPYHDGLRQEVPLEAFGDIQDIVPGMRFIAETEMGQRPVQVTEVLENTVVVD
EEEHHHHCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEE
GNHPLAGQSLTFFVEVKDVRLATDEEVAHGHIHAHGGCGGHHHHHDEGGCCGGHDHDHGH
CCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
CEHDSEKEAKPGCDGNGGCGCRG
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]