Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119773990
Identifier: 119773990
GI number: 119773990
Start: 1039663
End: 1040052
Strand: Reverse
Name: 119773990
Synonym: Sama_0853
Alternate gene names: NA
Gene position: 1040052-1039663 (Counterclockwise)
Preceding gene: 119773991
Following gene: 119773989
Centisome position: 24.15
GC content: 49.49
Gene sequence:
>390_bases GTGTTAGAACAACTGCATATCTCGCTGACAACACCGGCGCTGCTTTTTCCGGCCATTTCATTACTGCTGCTGGCTTATAC CAATAGGTTCTTTTCACTGGCCGCACTGATACGAAGCCTCTCCAGTGGCAAAGAACCCGTGCATCAGAACCAAATCACCA ATCTGAAAAAGCGAATTGTGATTATCAGACGCATGCAGGAAGCGGGCGTCAGCAGCTTTGCCCTGTGCGTGCTGTGCATG ATTTTTATCTACATTGGCATGAATAAAACCGGCTCACTCATCTTCGGTGCCAGCCTGCTGCTCCTGCTGTACTCGCTGAT CCTCTCGGTTGTTGAAATTCGCATCTCGGTCGATGCGCTCAATATCCACCTGAAAGAGATGAGCGAATGA
Upstream 100 bases:
>100_bases ACCCTGCTCAGATACAGCCAGACGCTGTAATTTGGTAGCCAACGCACTATAATGGCTCGCCTCAGGGGAATCTCTCCACT TTCCATAACGGGCACTCAAC
Downstream 100 bases:
>100_bases GCTGGTTTTACTTTTTTGACCTTTGCGGCACAGCCGTGTTTGCGCTCACCGGAGCCCTCGCGGCAGGCAGACACAGAATG GACCCCTTTGGCGTGACAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 129; Mature: 129
Protein sequence:
>129_residues MLEQLHISLTTPALLFPAISLLLLAYTNRFFSLAALIRSLSSGKEPVHQNQITNLKKRIVIIRRMQEAGVSSFALCVLCM IFIYIGMNKTGSLIFGASLLLLLYSLILSVVEIRISVDALNIHLKEMSE
Sequences:
>Translated_129_residues MLEQLHISLTTPALLFPAISLLLLAYTNRFFSLAALIRSLSSGKEPVHQNQITNLKKRIVIIRRMQEAGVSSFALCVLCM IFIYIGMNKTGSLIFGASLLLLLYSLILSVVEIRISVDALNIHLKEMSE >Mature_129_residues MLEQLHISLTTPALLFPAISLLLLAYTNRFFSLAALIRSLSSGKEPVHQNQITNLKKRIVIIRRMQEAGVSSFALCVLCM IFIYIGMNKTGSLIFGASLLLLLYSLILSVVEIRISVDALNIHLKEMSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14377; Mature: 14377
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEQLHISLTTPALLFPAISLLLLAYTNRFFSLAALIRSLSSGKEPVHQNQITNLKKRIV CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH IIRRMQEAGVSSFALCVLCMIFIYIGMNKTGSLIFGASLLLLLYSLILSVVEIRISVDAL HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIHLKEMSE HHHHHHCCC >Mature Secondary Structure MLEQLHISLTTPALLFPAISLLLLAYTNRFFSLAALIRSLSSGKEPVHQNQITNLKKRIV CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH IIRRMQEAGVSSFALCVLCMIFIYIGMNKTGSLIFGASLLLLLYSLILSVVEIRISVDAL HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIHLKEMSE HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA