Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773990

Identifier: 119773990

GI number: 119773990

Start: 1039663

End: 1040052

Strand: Reverse

Name: 119773990

Synonym: Sama_0853

Alternate gene names: NA

Gene position: 1040052-1039663 (Counterclockwise)

Preceding gene: 119773991

Following gene: 119773989

Centisome position: 24.15

GC content: 49.49

Gene sequence:

>390_bases
GTGTTAGAACAACTGCATATCTCGCTGACAACACCGGCGCTGCTTTTTCCGGCCATTTCATTACTGCTGCTGGCTTATAC
CAATAGGTTCTTTTCACTGGCCGCACTGATACGAAGCCTCTCCAGTGGCAAAGAACCCGTGCATCAGAACCAAATCACCA
ATCTGAAAAAGCGAATTGTGATTATCAGACGCATGCAGGAAGCGGGCGTCAGCAGCTTTGCCCTGTGCGTGCTGTGCATG
ATTTTTATCTACATTGGCATGAATAAAACCGGCTCACTCATCTTCGGTGCCAGCCTGCTGCTCCTGCTGTACTCGCTGAT
CCTCTCGGTTGTTGAAATTCGCATCTCGGTCGATGCGCTCAATATCCACCTGAAAGAGATGAGCGAATGA

Upstream 100 bases:

>100_bases
ACCCTGCTCAGATACAGCCAGACGCTGTAATTTGGTAGCCAACGCACTATAATGGCTCGCCTCAGGGGAATCTCTCCACT
TTCCATAACGGGCACTCAAC

Downstream 100 bases:

>100_bases
GCTGGTTTTACTTTTTTGACCTTTGCGGCACAGCCGTGTTTGCGCTCACCGGAGCCCTCGCGGCAGGCAGACACAGAATG
GACCCCTTTGGCGTGACAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MLEQLHISLTTPALLFPAISLLLLAYTNRFFSLAALIRSLSSGKEPVHQNQITNLKKRIVIIRRMQEAGVSSFALCVLCM
IFIYIGMNKTGSLIFGASLLLLLYSLILSVVEIRISVDALNIHLKEMSE

Sequences:

>Translated_129_residues
MLEQLHISLTTPALLFPAISLLLLAYTNRFFSLAALIRSLSSGKEPVHQNQITNLKKRIVIIRRMQEAGVSSFALCVLCM
IFIYIGMNKTGSLIFGASLLLLLYSLILSVVEIRISVDALNIHLKEMSE
>Mature_129_residues
MLEQLHISLTTPALLFPAISLLLLAYTNRFFSLAALIRSLSSGKEPVHQNQITNLKKRIVIIRRMQEAGVSSFALCVLCM
IFIYIGMNKTGSLIFGASLLLLLYSLILSVVEIRISVDALNIHLKEMSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14377; Mature: 14377

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQLHISLTTPALLFPAISLLLLAYTNRFFSLAALIRSLSSGKEPVHQNQITNLKKRIV
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IIRRMQEAGVSSFALCVLCMIFIYIGMNKTGSLIFGASLLLLLYSLILSVVEIRISVDAL
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIHLKEMSE
HHHHHHCCC
>Mature Secondary Structure
MLEQLHISLTTPALLFPAISLLLLAYTNRFFSLAALIRSLSSGKEPVHQNQITNLKKRIV
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IIRRMQEAGVSSFALCVLCMIFIYIGMNKTGSLIFGASLLLLLYSLILSVVEIRISVDAL
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIHLKEMSE
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA