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The map label for this gene is yebA [H]

Identifier: 119773986

GI number: 119773986

Start: 1035752

End: 1037140

Strand: Reverse

Name: yebA [H]

Synonym: Sama_0849

Alternate gene names: 119773986

Gene position: 1037140-1035752 (Counterclockwise)

Preceding gene: 119773988

Following gene: 119773985

Centisome position: 24.09

GC content: 52.99

Gene sequence:

>1389_bases
ATGACAAAGGTTATTACGCTTCTCAAGCTGCTCCCCAAAAAGCATCAGGTCATTCTGAGCATTCTTTTATTGTTAACCAC
AGTCACCCTGTTTTTCCCCTCTGAGGATGCCGAAGCCTCACGGCAAACCCCAACAGCAAACGACAATATCGATTTTACCC
TGCCCTTGTCGCAGCGCACCCCCACGCCGCCGATGGGCCAGGCCGCAGACATAGACATAGCCGCCCCCAATGGTGAGAGC
GTGCAGGAAGCCATGCCAAGTGCAAAAGCCAGCGCAACGCCCTCAAACCGCGAGGTAGAGCATTTTGAAGTATCCAGGGG
CGACACATTGGCGGCACTGTTTCAGCGTGCCGGACTCTCCAGCCGCGATGTTTACGAAATCACCCGGCTGCCGGAGGCCA
AAAACAACCTGCTGAAAATCATGCCTGGGGAAGAAATTGTCATCATGAAAGATGACAAGGGTGAGTTTGCCGAGCTCAGT
TACCGTATCGACGGCGTGTCGACTCTCACGGTACAGCGCACCGAATCCGGGTACAGCGAGCGAATCGATGTAAAGCAGCT
GACCACGCGAACCGATTTTGCCCAGGGTAAGATTTTCAGCAATTTTTGGACAGCCGCCGTGGATGCTGGCCTTAACAGCG
GCCAGATCATGGATTTGGCCACCGTGTTTGGCTGGGACATCGACTTTGCCCAGGATCTGCAAAAAGGCGATACTTTCGCC
CTGCTCTATGAAAAACACTATGCCGACGGCGAGTTCGTGCGAAATGGTGCCATTCTGGCGGCTGAGTTTATCAACGATGG
CAAACGCTACACTGCGGTGCGCTACGAAGACGGTAACTACTATTCCGAAAGTGGCCAGAGCATGCGCAAAGCCTTTTTGC
GATCGCCGGTTGACTTCAATTACGTCAGTTCCAATTTCAACCCCAAGCGCCTGCATCCGGTAACAGGCCAGGTCAAGGCC
CACAGGGGCGTTGACTATGTAGCCGCCATTGGCACACCGATTAAAGCCGCAGGCGCGGGCAAGGTGATAGAGGCCGGTTA
CAATCAGTACAATGGCAACTACGTGTTTATTCGCCATAACGGCACTTACACCACCAAGTATCTGCACCTGAACAAACGCA
GGGTGAAAAAGGGTGACTCGGTTAAACAAGGCCAAATTATCGGAACACTCGGCAAAACCGGCCGGGTGACCGGGGCTCAC
CTGCATTATGAATTTATCGTCAATGGCGTACACAGAAACCCCCGTACGATTGACCTGCCCAAGGCAGAGTCCATTGGCAA
GAAAGAATTGGCGAAATTCAGCCGCATCAGCAAGGATTTGATGGCTAAAATTTCCTTTAACAAGCAACAGCAACTGGCGC
TGGCGCCAGAGGGCAAACAAACTCCATGA

Upstream 100 bases:

>100_bases
TTTCAATCAAAGAGACCTATGTTACTTGTTAGCCTGGGCAAATGAAAGTGTGTACACTAGGCCCAATCGACAGGAAATAG
GGATTTGGTACCCGGGTCAA

Downstream 100 bases:

>100_bases
GCCAATCTTTGTTTATCGGACTCATGTCCGGCACCAGTATGGACGGTGTGGACGCTGTCCTGGTGGATTTCGACACTCCA
TCCCCCAAACTCATTGCCAC

Product: M24/M37 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MTKVITLLKLLPKKHQVILSILLLLTTVTLFFPSEDAEASRQTPTANDNIDFTLPLSQRTPTPPMGQAADIDIAAPNGES
VQEAMPSAKASATPSNREVEHFEVSRGDTLAALFQRAGLSSRDVYEITRLPEAKNNLLKIMPGEEIVIMKDDKGEFAELS
YRIDGVSTLTVQRTESGYSERIDVKQLTTRTDFAQGKIFSNFWTAAVDAGLNSGQIMDLATVFGWDIDFAQDLQKGDTFA
LLYEKHYADGEFVRNGAILAAEFINDGKRYTAVRYEDGNYYSESGQSMRKAFLRSPVDFNYVSSNFNPKRLHPVTGQVKA
HRGVDYVAAIGTPIKAAGAGKVIEAGYNQYNGNYVFIRHNGTYTTKYLHLNKRRVKKGDSVKQGQIIGTLGKTGRVTGAH
LHYEFIVNGVHRNPRTIDLPKAESIGKKELAKFSRISKDLMAKISFNKQQQLALAPEGKQTP

Sequences:

>Translated_462_residues
MTKVITLLKLLPKKHQVILSILLLLTTVTLFFPSEDAEASRQTPTANDNIDFTLPLSQRTPTPPMGQAADIDIAAPNGES
VQEAMPSAKASATPSNREVEHFEVSRGDTLAALFQRAGLSSRDVYEITRLPEAKNNLLKIMPGEEIVIMKDDKGEFAELS
YRIDGVSTLTVQRTESGYSERIDVKQLTTRTDFAQGKIFSNFWTAAVDAGLNSGQIMDLATVFGWDIDFAQDLQKGDTFA
LLYEKHYADGEFVRNGAILAAEFINDGKRYTAVRYEDGNYYSESGQSMRKAFLRSPVDFNYVSSNFNPKRLHPVTGQVKA
HRGVDYVAAIGTPIKAAGAGKVIEAGYNQYNGNYVFIRHNGTYTTKYLHLNKRRVKKGDSVKQGQIIGTLGKTGRVTGAH
LHYEFIVNGVHRNPRTIDLPKAESIGKKELAKFSRISKDLMAKISFNKQQQLALAPEGKQTP
>Mature_461_residues
TKVITLLKLLPKKHQVILSILLLLTTVTLFFPSEDAEASRQTPTANDNIDFTLPLSQRTPTPPMGQAADIDIAAPNGESV
QEAMPSAKASATPSNREVEHFEVSRGDTLAALFQRAGLSSRDVYEITRLPEAKNNLLKIMPGEEIVIMKDDKGEFAELSY
RIDGVSTLTVQRTESGYSERIDVKQLTTRTDFAQGKIFSNFWTAAVDAGLNSGQIMDLATVFGWDIDFAQDLQKGDTFAL
LYEKHYADGEFVRNGAILAAEFINDGKRYTAVRYEDGNYYSESGQSMRKAFLRSPVDFNYVSSNFNPKRLHPVTGQVKAH
RGVDYVAAIGTPIKAAGAGKVIEAGYNQYNGNYVFIRHNGTYTTKYLHLNKRRVKKGDSVKQGQIIGTLGKTGRVTGAHL
HYEFIVNGVHRNPRTIDLPKAESIGKKELAKFSRISKDLMAKISFNKQQQLALAPEGKQTP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=444, Percent_Identity=33.7837837837838, Blast_Score=228, Evalue=9e-61,
Organism=Escherichia coli, GI87082174, Length=105, Percent_Identity=40.9523809523809, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 51176; Mature: 51044

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVITLLKLLPKKHQVILSILLLLTTVTLFFPSEDAEASRQTPTANDNIDFTLPLSQRT
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCCCCCHHCCCCCCCCCEEEEEECCCCC
PTPPMGQAADIDIAAPNGESVQEAMPSAKASATPSNREVEHFEVSRGDTLAALFQRAGLS
CCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCC
SRDVYEITRLPEAKNNLLKIMPGEEIVIMKDDKGEFAELSYRIDGVSTLTVQRTESGYSE
CCCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEECCEEEEEEEECCCCCCC
RIDVKQLTTRTDFAQGKIFSNFWTAAVDAGLNSGQIMDLATVFGWDIDFAQDLQKGDTFA
CCCHHHHHHHCCHHCCCHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCHHHHHHCCCCEEE
LLYEKHYADGEFVRNGAILAAEFINDGKRYTAVRYEDGNYYSESGQSMRKAFLRSPVDFN
EEEEEECCCCCEEECCCEEEEEECCCCCEEEEEEEECCCEEHHHHHHHHHHHHCCCCCCE
YVSSNFNPKRLHPVTGQVKAHRGVDYVAAIGTPIKAAGAGKVIEAGYNQYNGNYVFIRHN
EECCCCCCCEECCCCCCEECCCCCEEEEECCCCCCCCCCCCEEECCCCEECCCEEEEEEC
GTYTTKYLHLNKRRVKKGDSVKQGQIIGTLGKTGRVTGAHLHYEFIVNGVHRNPRTIDLP
CEEEEEEEEECHHHHCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECC
KAESIGKKELAKFSRISKDLMAKISFNKQQQLALAPEGKQTP
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
>Mature Secondary Structure 
TKVITLLKLLPKKHQVILSILLLLTTVTLFFPSEDAEASRQTPTANDNIDFTLPLSQRT
HHHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCCCCCHHCCCCCCCCCEEEEEECCCCC
PTPPMGQAADIDIAAPNGESVQEAMPSAKASATPSNREVEHFEVSRGDTLAALFQRAGLS
CCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCC
SRDVYEITRLPEAKNNLLKIMPGEEIVIMKDDKGEFAELSYRIDGVSTLTVQRTESGYSE
CCCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCEEEEEEEECCEEEEEEEECCCCCCC
RIDVKQLTTRTDFAQGKIFSNFWTAAVDAGLNSGQIMDLATVFGWDIDFAQDLQKGDTFA
CCCHHHHHHHCCHHCCCHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCHHHHHHCCCCEEE
LLYEKHYADGEFVRNGAILAAEFINDGKRYTAVRYEDGNYYSESGQSMRKAFLRSPVDFN
EEEEEECCCCCEEECCCEEEEEECCCCCEEEEEEEECCCEEHHHHHHHHHHHHCCCCCCE
YVSSNFNPKRLHPVTGQVKAHRGVDYVAAIGTPIKAAGAGKVIEAGYNQYNGNYVFIRHN
EECCCCCCCEECCCCCCEECCCCCEEEEECCCCCCCCCCCCEEECCCCEECCCEEEEEEC
GTYTTKYLHLNKRRVKKGDSVKQGQIIGTLGKTGRVTGAHLHYEFIVNGVHRNPRTIDLP
CEEEEEEEEECHHHHCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECC
KAESIGKKELAKFSRISKDLMAKISFNKQQQLALAPEGKQTP
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]