Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119773905

Identifier: 119773905

GI number: 119773905

Start: 951945

End: 952535

Strand: Reverse

Name: 119773905

Synonym: Sama_0768

Alternate gene names: NA

Gene position: 952535-951945 (Counterclockwise)

Preceding gene: 119773911

Following gene: 119773895

Centisome position: 22.12

GC content: 58.38

Gene sequence:

>591_bases
ATGTTGTCTCACTCGTTTCGCCCGTGGGCCACAGCCCTGTTGTGCACACTGTTTTTGCAGGCCTGCGTTGCCCCCATGTT
GCTGCTGTCCCCCCAAAGCCAACTGCTGTGGGCACTCATGAAACCCCTGGTGGGGCTCGATCCCAATGAGGTCAACCTGC
TGCAGCAGCCCATGATAAAAAGCCGACTTGAGCCCCTCCTTGGCGAGCATTACGGCACTGCCGTGAGCCTGCTCCAAACC
GCAGATGAGCTGCAACAGGAAGGACCACTGTTTTATCTGGTATCCCGCTACACGCCTGTGCCCGAGATGGCCGAAAAAGC
CGGGTTTGTGTGGAACAGCGATACCAACCAGATGGCAGTAATGCTGATTAAGGGGGATGTGACCCAGGTCTTCGCCGAGC
CACTGCAGCAGGCCGTTCAGGGCACATTGGTTTCTCAGATGCCCGTTTGGCCGACCGCCCTGGAACCCTTTGCACAAGGC
GCAGGATCACTGAATCAGAGCCTGAGTGACGCAGAAAAGGACGCCGCTAAAGCGATACCAACGGCACTTGCCCCCGTGGC
GCCCTCGGCTGCGGTCACTGGACGTCAATAA

Upstream 100 bases:

>100_bases
GGCCTGTCGCGCAAGGCTAGAATGCTCGCCGGTTTGCCACCCAAAGTTCACCCAAGGTGCGTAGCCCCAAGCCCCCAACC
CCTATCGGAATCCTTATCCC

Downstream 100 bases:

>100_bases
CAAGAAAGGCCCTCTCAGGAGGGCCCTTTTCTGACAACTGCCTTACGCAAGAGTTACACCAAAAAGCGCCCCACATTACC
CGACAGCCCTGTACCAATCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MLSHSFRPWATALLCTLFLQACVAPMLLLSPQSQLLWALMKPLVGLDPNEVNLLQQPMIKSRLEPLLGEHYGTAVSLLQT
ADELQQEGPLFYLVSRYTPVPEMAEKAGFVWNSDTNQMAVMLIKGDVTQVFAEPLQQAVQGTLVSQMPVWPTALEPFAQG
AGSLNQSLSDAEKDAAKAIPTALAPVAPSAAVTGRQ

Sequences:

>Translated_196_residues
MLSHSFRPWATALLCTLFLQACVAPMLLLSPQSQLLWALMKPLVGLDPNEVNLLQQPMIKSRLEPLLGEHYGTAVSLLQT
ADELQQEGPLFYLVSRYTPVPEMAEKAGFVWNSDTNQMAVMLIKGDVTQVFAEPLQQAVQGTLVSQMPVWPTALEPFAQG
AGSLNQSLSDAEKDAAKAIPTALAPVAPSAAVTGRQ
>Mature_196_residues
MLSHSFRPWATALLCTLFLQACVAPMLLLSPQSQLLWALMKPLVGLDPNEVNLLQQPMIKSRLEPLLGEHYGTAVSLLQT
ADELQQEGPLFYLVSRYTPVPEMAEKAGFVWNSDTNQMAVMLIKGDVTQVFAEPLQQAVQGTLVSQMPVWPTALEPFAQG
AGSLNQSLSDAEKDAAKAIPTALAPVAPSAAVTGRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21183; Mature: 21183

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSHSFRPWATALLCTLFLQACVAPMLLLSPQSQLLWALMKPLVGLDPNEVNLLQQPMIK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SRLEPLLGEHYGTAVSLLQTADELQQEGPLFYLVSRYTPVPEMAEKAGFVWNSDTNQMAV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCEEE
MLIKGDVTQVFAEPLQQAVQGTLVSQMPVWPTALEPFAQGAGSLNQSLSDAEKDAAKAIP
EEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALAPVAPSAAVTGRQ
HHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLSHSFRPWATALLCTLFLQACVAPMLLLSPQSQLLWALMKPLVGLDPNEVNLLQQPMIK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SRLEPLLGEHYGTAVSLLQTADELQQEGPLFYLVSRYTPVPEMAEKAGFVWNSDTNQMAV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCEEE
MLIKGDVTQVFAEPLQQAVQGTLVSQMPVWPTALEPFAQGAGSLNQSLSDAEKDAAKAIP
EEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALAPVAPSAAVTGRQ
HHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA