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The map label for this gene is oprF [H]

Identifier: 119773835

GI number: 119773835

Start: 860337

End: 861791

Strand: Reverse

Name: oprF [H]

Synonym: Sama_0697

Alternate gene names: 119773835

Gene position: 861791-860337 (Counterclockwise)

Preceding gene: 119773836

Following gene: 119773834

Centisome position: 20.01

GC content: 52.78

Gene sequence:

>1455_bases
ATGAAAAGACATATTTTCACCTGTGCCATGGCGATTTATCTTCCGGCCACATTGCTGCCAACACAAACAGTTGCGGCCGA
TTTACCCTCGCTTTTTTCGGTCTTTCCCGAAGCCAAAATAGAGACACAAGAGCAGCGGCACTATATTCCCTATCCGTTAA
TTACGGGAATGGGCGGTAAAGTCTATAGCGTTACTGACGTGGGCGGTGTGCTCAGTCGCATCAATTACAAGCTGCCTGCG
AGCTTTACTCCTGAACACATCATCAATAACCACAAGGCGCAGTTAGTGCAGCAAGGGGCAAACATATTGTTTGAATGCCA
CGGCAACGACTGCGGTAACGAAGAAAAGCTCTACTATCAGGTATCGCCCTTATCCAGCGTGAGTAAGCGTGAGCCATCGA
TGCTGACCGCCAAACTCTCCAGAGCCAGCGGTGATATCTACATCAGCCTGTACAGCGCCAATTGGCACAGGGGCACCAAT
CTGCAACTGGATGTGCTCGAAGCCACCCCCGAACCTCTTGATCTGGTCAAGATAAATACTGCCATGCTCACCGCTCAACC
CACCGACATCAAGGTGGCCGATAACAGCACAAAAGATGTCAGGGGCAGCGTCGACCATCCCCTGATGCAGCGCCTGCCCG
GCGCCTTCATTGCCAAATACAGCCAGCTGGGGTATGCAAAATCCCCTGTGTTGACCGGCGTCGAAGGGAAAAAAGCTATC
ACGGCCATTCAAGAGGGTAAACTCACGCAAATCGCCTACAGCCTGCCGCGAAGCTACTCCGAATTTGAAGTGAATGCCAA
CTATGTGGCAGCGCTTAAAAAGTTGGGATTTCAAGAGGTTTTCAGTTGCGAGGCCAAGGGCTGTATCAGCAAGGATGCCA
TCTATTATGCCCTTAAGCCCACAGTGTCCAACGGCAATGATGAAAGCCTGTTCTATAGCCTGTATCGCCTCAGTCGCCCT
GAGGGGGATATCACTGTCTCCAGTTATACCCTTGGCTTTTCGGGCGCACTGTGGAACGAGCTTAAGATAATAGAGGCAAC
CGGCCTGAACGATAACCGGGTTGGTATCGATCTCAATGCCCTCACAGACGCCATCACTCAAACAGGCAAAGCCACCCTCG
ACGGTCTGCTGTTTGACTACGACAGCGACCGCATGCTGCCTGAATCCAAACCCGTATTGGAGGTACTGGCAAGCTACCTT
AAGCAAAACCCGGCACTGAATTTTTATGTGGTTGGCCACACAGACGATCAGGGCGATAAAGCCTACAACCTCAGCCTGTC
TGAGCGCCGCGCCGCCGCCGTGGTTAAGGCCTTGGGAGCGGATTATCAAATCAAACCGGCGCAGCTTGAAGCCCATGGCA
TGGGGGAATTCAGCCCGGTGGCGAGCAACGCCAACGAGGCAGGCCAGAGCCAAAACCGCCGGGTAGAGTTGGTGCTGAGG
TCCGATAATAAGTAG

Upstream 100 bases:

>100_bases
GGCACTCAACCGCAGAGTGGAATTGGTGCTGCGTTCGGACATGGAATAGCCAGCTTTTGCAAAGCATCAAAGAATCAAAC
AGATAAGGATTTACAGCAGT

Downstream 100 bases:

>100_bases
CGGCTAAGGTCAACCGCATTTGGCAGGTGATTGCGTCCTGACAACATCACCTGCGAAGATGGCGCGCTTGGAAATATAAG
GAAATATGCCATGAAATTGC

Product: outer membrane protein and related peptidoglycan-associated (LipO)protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MKRHIFTCAMAIYLPATLLPTQTVAADLPSLFSVFPEAKIETQEQRHYIPYPLITGMGGKVYSVTDVGGVLSRINYKLPA
SFTPEHIINNHKAQLVQQGANILFECHGNDCGNEEKLYYQVSPLSSVSKREPSMLTAKLSRASGDIYISLYSANWHRGTN
LQLDVLEATPEPLDLVKINTAMLTAQPTDIKVADNSTKDVRGSVDHPLMQRLPGAFIAKYSQLGYAKSPVLTGVEGKKAI
TAIQEGKLTQIAYSLPRSYSEFEVNANYVAALKKLGFQEVFSCEAKGCISKDAIYYALKPTVSNGNDESLFYSLYRLSRP
EGDITVSSYTLGFSGALWNELKIIEATGLNDNRVGIDLNALTDAITQTGKATLDGLLFDYDSDRMLPESKPVLEVLASYL
KQNPALNFYVVGHTDDQGDKAYNLSLSERRAAAVVKALGADYQIKPAQLEAHGMGEFSPVASNANEAGQSQNRRVELVLR
SDNK

Sequences:

>Translated_484_residues
MKRHIFTCAMAIYLPATLLPTQTVAADLPSLFSVFPEAKIETQEQRHYIPYPLITGMGGKVYSVTDVGGVLSRINYKLPA
SFTPEHIINNHKAQLVQQGANILFECHGNDCGNEEKLYYQVSPLSSVSKREPSMLTAKLSRASGDIYISLYSANWHRGTN
LQLDVLEATPEPLDLVKINTAMLTAQPTDIKVADNSTKDVRGSVDHPLMQRLPGAFIAKYSQLGYAKSPVLTGVEGKKAI
TAIQEGKLTQIAYSLPRSYSEFEVNANYVAALKKLGFQEVFSCEAKGCISKDAIYYALKPTVSNGNDESLFYSLYRLSRP
EGDITVSSYTLGFSGALWNELKIIEATGLNDNRVGIDLNALTDAITQTGKATLDGLLFDYDSDRMLPESKPVLEVLASYL
KQNPALNFYVVGHTDDQGDKAYNLSLSERRAAAVVKALGADYQIKPAQLEAHGMGEFSPVASNANEAGQSQNRRVELVLR
SDNK
>Mature_484_residues
MKRHIFTCAMAIYLPATLLPTQTVAADLPSLFSVFPEAKIETQEQRHYIPYPLITGMGGKVYSVTDVGGVLSRINYKLPA
SFTPEHIINNHKAQLVQQGANILFECHGNDCGNEEKLYYQVSPLSSVSKREPSMLTAKLSRASGDIYISLYSANWHRGTN
LQLDVLEATPEPLDLVKINTAMLTAQPTDIKVADNSTKDVRGSVDHPLMQRLPGAFIAKYSQLGYAKSPVLTGVEGKKAI
TAIQEGKLTQIAYSLPRSYSEFEVNANYVAALKKLGFQEVFSCEAKGCISKDAIYYALKPTVSNGNDESLFYSLYRLSRP
EGDITVSSYTLGFSGALWNELKIIEATGLNDNRVGIDLNALTDAITQTGKATLDGLLFDYDSDRMLPESKPVLEVLASYL
KQNPALNFYVVGHTDDQGDKAYNLSLSERRAAAVVKALGADYQIKPAQLEAHGMGEFSPVASNANEAGQSQNRRVELVLR
SDNK

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=106, Percent_Identity=34.9056603773585, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=34.6153846153846, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 53054; Mature: 53054

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRHIFTCAMAIYLPATLLPTQTVAADLPSLFSVFPEAKIETQEQRHYIPYPLITGMGGK
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEECCCCC
VYSVTDVGGVLSRINYKLPASFTPEHIINNHKAQLVQQGANILFECHGNDCGNEEKLYYQ
EEEECHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHCCCCEEEEECCCCCCCCCEEEEE
VSPLSSVSKREPSMLTAKLSRASGDIYISLYSANWHRGTNLQLDVLEATPEPLDLVKINT
ECCCCHHHHCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEE
AMLTAQPTDIKVADNSTKDVRGSVDHPLMQRLPGAFIAKYSQLGYAKSPVLTGVEGKKAI
EEEEECCCEEEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCEECCCCCHHH
TAIQEGKLTQIAYSLPRSYSEFEVNANYVAALKKLGFQEVFSCEAKGCISKDAIYYALKP
HHHHCCCHHHHHHHCCCCCCEEEECCHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEEEEC
TVSNGNDESLFYSLYRLSRPEGDITVSSYTLGFSGALWNELKIIEATGLNDNRVGIDLNA
CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEHHH
LTDAITQTGKATLDGLLFDYDSDRMLPESKPVLEVLASYLKQNPALNFYVVGHTDDQGDK
HHHHHHHCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
AYNLSLSERRAAAVVKALGADYQIKPAQLEAHGMGEFSPVASNANEAGQSQNRRVELVLR
EEECCHHHHHHHHHHHHHCCCCEECCCEEEECCCCCCCCCCCCCHHCCCCCCCEEEEEEE
SDNK
CCCC
>Mature Secondary Structure
MKRHIFTCAMAIYLPATLLPTQTVAADLPSLFSVFPEAKIETQEQRHYIPYPLITGMGGK
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEECCCCC
VYSVTDVGGVLSRINYKLPASFTPEHIINNHKAQLVQQGANILFECHGNDCGNEEKLYYQ
EEEECHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHCCCCEEEEECCCCCCCCCEEEEE
VSPLSSVSKREPSMLTAKLSRASGDIYISLYSANWHRGTNLQLDVLEATPEPLDLVKINT
ECCCCHHHHCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEE
AMLTAQPTDIKVADNSTKDVRGSVDHPLMQRLPGAFIAKYSQLGYAKSPVLTGVEGKKAI
EEEEECCCEEEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCEECCCCCHHH
TAIQEGKLTQIAYSLPRSYSEFEVNANYVAALKKLGFQEVFSCEAKGCISKDAIYYALKP
HHHHCCCHHHHHHHCCCCCCEEEECCHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEEEEC
TVSNGNDESLFYSLYRLSRPEGDITVSSYTLGFSGALWNELKIIEATGLNDNRVGIDLNA
CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEHHH
LTDAITQTGKATLDGLLFDYDSDRMLPESKPVLEVLASYLKQNPALNFYVVGHTDDQGDK
HHHHHHHCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
AYNLSLSERRAAAVVKALGADYQIKPAQLEAHGMGEFSPVASNANEAGQSQNRRVELVLR
EEECCHHHHHHHHHHHHHCCCCEECCCEEEECCCCCCCCCCCCCHHCCCCCCCEEEEEEE
SDNK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]