Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119773765

Identifier: 119773765

GI number: 119773765

Start: 780003

End: 780449

Strand: Reverse

Name: 119773765

Synonym: Sama_0627

Alternate gene names: NA

Gene position: 780449-780003 (Counterclockwise)

Preceding gene: 119773769

Following gene: 119773764

Centisome position: 18.12

GC content: 51.23

Gene sequence:

>447_bases
ATGCTGAAATATATAACTATGATAATGAGCCTTGCAGTGTTGGGCGCCAACGCCAACTGTAAAGGCAGTACAGAGCTCGG
TGCTGTGAATTTCGACAAAAACAGCTCCTACTTCGATGCGGCGGGCACTGCGACCCTGAAACAACTGCTTGAGACCCAAC
AAACCAGTGCCGACACAGGTAATGGTTATCTGTTGCTTGAATTTGCATTCAACCGCAATGCCGGTGACGATGAGCTGCAA
AAATACAATATGTGGCTCGCCGAGCGCCGTATCGAGAGGGTAAAAAGCTACCTAATCAACGCAGGCTTCGGCGCTATGAT
GGTAAGCCGTATTCGTACGGCGGTGGATACCGAAAGTCGCGCCCTGGCATTGCAATGGTGCAAGGCAAGTGATGAAGACC
AAGGCCAAATGTTGGCCGATGCCTCGGTCGCCGAACACCGTCTTTGA

Upstream 100 bases:

>100_bases
TTTGGCTCTGTCTACAAATTGAATTCCACAGGGCTTTCGCTTACAGTGGCAGGCCTAAAGAACCCAGGTTTTACAGGATT
TTGTTCTTTAAAGGTGAAGG

Downstream 100 bases:

>100_bases
AATCAAAGACCTTGTCAGTGAACCAAGAGGCATCTTGATCTCAATTCCGGTGTTTTTCTGATGTGTTTTACAGTTTTGAA
AGCATGATTTAGTCCGCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MLKYITMIMSLAVLGANANCKGSTELGAVNFDKNSSYFDAAGTATLKQLLETQQTSADTGNGYLLLEFAFNRNAGDDELQ
KYNMWLAERRIERVKSYLINAGFGAMMVSRIRTAVDTESRALALQWCKASDEDQGQMLADASVAEHRL

Sequences:

>Translated_148_residues
MLKYITMIMSLAVLGANANCKGSTELGAVNFDKNSSYFDAAGTATLKQLLETQQTSADTGNGYLLLEFAFNRNAGDDELQ
KYNMWLAERRIERVKSYLINAGFGAMMVSRIRTAVDTESRALALQWCKASDEDQGQMLADASVAEHRL
>Mature_148_residues
MLKYITMIMSLAVLGANANCKGSTELGAVNFDKNSSYFDAAGTATLKQLLETQQTSADTGNGYLLLEFAFNRNAGDDELQ
KYNMWLAERRIERVKSYLINAGFGAMMVSRIRTAVDTESRALALQWCKASDEDQGQMLADASVAEHRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16330; Mature: 16330

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKYITMIMSLAVLGANANCKGSTELGAVNFDKNSSYFDAAGTATLKQLLETQQTSADTG
CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC
NGYLLLEFAFNRNAGDDELQKYNMWLAERRIERVKSYLINAGFGAMMVSRIRTAVDTESR
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
ALALQWCKASDEDQGQMLADASVAEHRL
HHHHHHCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLKYITMIMSLAVLGANANCKGSTELGAVNFDKNSSYFDAAGTATLKQLLETQQTSADTG
CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC
NGYLLLEFAFNRNAGDDELQKYNMWLAERRIERVKSYLINAGFGAMMVSRIRTAVDTESR
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
ALALQWCKASDEDQGQMLADASVAEHRL
HHHHHHCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA