Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119773705
Identifier: 119773705
GI number: 119773705
Start: 706314
End: 706658
Strand: Reverse
Name: 119773705
Synonym: Sama_0567
Alternate gene names: NA
Gene position: 706658-706314 (Counterclockwise)
Preceding gene: 119773706
Following gene: 119773704
Centisome position: 16.41
GC content: 53.62
Gene sequence:
>345_bases ATGGGTGCAGGCCAAACTCCCCATCCTCAGTTAATCTGGCCAGCCCTGCTCAAACAGCAGGGCTGTAACGAACTCTTACC GCTGCGAACCAACGACGACTGGCAGAGGTTCTGTGCTGATTCCAAACATCTGCTGCAATATGGCGACAAACTGGTCGATT CCAACTTTCACTGTTTTGTACTTGAAGAAGATGCCCACTGGCATCCAGCCGCCCCCCTGCCACCCGAGGGTTTGAATGAC CTCATTCGCGCCCACTGCGCCACCCTCGGTCACTGTTGTACCAGCAAGATGCATCTGCATTCAGTGATGGATGCCATCGA TTTTCTCAATGCATTGGAGGGCTGA
Upstream 100 bases:
>100_bases AGGTCAGGCCTTTAACCGCACCCAAAGGGAACACGGCACCTGTATAGTCACCAATCAGGGGCAGGAAGTGTACTTCGATT ACAGTGCCAAGCCCTGATCA
Downstream 100 bases:
>100_bases AAAAGCCCGTATTTCCCGCTATGATGCTCGCCAATTTATTGTGTATGGCCATGCTGATGGTCAGATGCGTGTTTACCGCA GGGAAAAATGAGGTGCATTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 114; Mature: 113
Protein sequence:
>114_residues MGAGQTPHPQLIWPALLKQQGCNELLPLRTNDDWQRFCADSKHLLQYGDKLVDSNFHCFVLEEDAHWHPAAPLPPEGLND LIRAHCATLGHCCTSKMHLHSVMDAIDFLNALEG
Sequences:
>Translated_114_residues MGAGQTPHPQLIWPALLKQQGCNELLPLRTNDDWQRFCADSKHLLQYGDKLVDSNFHCFVLEEDAHWHPAAPLPPEGLND LIRAHCATLGHCCTSKMHLHSVMDAIDFLNALEG >Mature_113_residues GAGQTPHPQLIWPALLKQQGCNELLPLRTNDDWQRFCADSKHLLQYGDKLVDSNFHCFVLEEDAHWHPAAPLPPEGLNDL IRAHCATLGHCCTSKMHLHSVMDAIDFLNALEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12778; Mature: 12646
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 7.9 %Cys+Met (Translated Protein) 5.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAGQTPHPQLIWPALLKQQGCNELLPLRTNDDWQRFCADSKHLLQYGDKLVDSNFHCFV CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCEEEE LEEDAHWHPAAPLPPEGLNDLIRAHCATLGHCCTSKMHLHSVMDAIDFLNALEG ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GAGQTPHPQLIWPALLKQQGCNELLPLRTNDDWQRFCADSKHLLQYGDKLVDSNFHCFV CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCEEEE LEEDAHWHPAAPLPPEGLNDLIRAHCATLGHCCTSKMHLHSVMDAIDFLNALEG ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA