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The map label for this gene is yihS [H]

Identifier: 119773698

GI number: 119773698

Start: 695465

End: 696634

Strand: Reverse

Name: yihS [H]

Synonym: Sama_0560

Alternate gene names: 119773698

Gene position: 696634-695465 (Counterclockwise)

Preceding gene: 119773699

Following gene: 119773697

Centisome position: 16.18

GC content: 55.81

Gene sequence:

>1170_bases
ATGAAGTTCTACAACCGTGATTTTTTACTGTCCCATTCCCAAAGCATTCTGGACTTTTACGACCCACGGGTACTGGATGC
CAGTGGCGGTTATTTTCACAACTACTATGATGACGGCAGTTTGTTTGAGCCGGGGTTTCGCCAGTTGGTCAGCAGTTGCC
GCATTACCGTGAACTACGCCCGCGCCGCCGACATACTGGATAAACCCGAATATTTGGCCCACGCCCGCCATGGCCTTAAT
TATCTGCTAAACGTACATCTGCAAGCGGATGAGCGCTTCGCCTGGACATTGAAAAGCCATCGGCCCGAAGACATGACCCA
GCAGGCCTATGGCTATGCCTTTGCGCTGCTCGCCTTCGCGGCCTGCCGCAAATCGGGCATTCTTAAAGACAACAACAAAC
TGCTGTGGATCTACAACCTGCTTGAGCAACGTTTCTGGCAGCCTGAGTACGGCCTTTACGCCGATGAAATCGGCGCCGAT
GGCGTGCTGTCTGACTACCGCGGCCAGAACGCCAATATGCACCTGTGCGAAGCCATGATTGCCGCCTTCGAGGCCAGCGG
CGAAGGCCGCTTCCTCGACCGCGCCATGGAGATTGCCGACAAGATTGCCAACCGTCAGGCAGCGCTCACCGGCGGTATCA
TCTGGGAGCACTTTACCCCCGGATTCGCCATCAATTGGGAGTACAACAAGGACGATCCCAAGAACCTCTATCGCCCCTGG
GGTTTCCAGGGCGGGCACCAGACCGAGTGGGCCAAGCTGCTGTTATCCCTCGCCCGCCACAGCCATCAGCCATGGCTGAT
AAGCCGCGCCAAAACCCTGTTCGATACCGCCTTCGAAAAAAGCTGGGACAAGGAGCACGGCGGCATGGTGTATGGCTTTG
GTCCGAACGGCGACTGGTGTGACGACGATAAGTATTTCTGGGTGCAGGCTGAAAGTTTTGCCGCTGCCGCCATGCTGTAT
CAGCAAACCGGCGAGCAAAAATACCTCGATGCCTATAACGCCCTTTGGAACTACGCCTGGCAGCATTTTGTCGACCATGA
ACACGGCGCCTGGTTCAGGGTGCTGTATCGCGATAACCGCAAGTACTCCAACGAAAAGAGCACTGCCGGTGCCAAGTGTG
ACTACCACACCCTGGGTGCCTGTTTCGATAGCCTCCGGGATTTAACTTAA

Upstream 100 bases:

>100_bases
GGCCTCAATGGGCGATGTACTCCACACCATCAGCGTTGACGACTCACGTTTACCCAAGCCTTGCCAACGCAGTTGGTAAG
GCCTTTTTTCAAGGCATTTT

Downstream 100 bases:

>100_bases
TCGGGTGCCTCTCCGGCGCCTTCCAATATTACAAAATCCAAGGTTCCTTCCCTTTTGCCGCCTCAGGGCGGCGTTTTTTT
GCCCAGCTTTCGCAGATGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKFYNRDFLLSHSQSILDFYDPRVLDASGGYFHNYYDDGSLFEPGFRQLVSSCRITVNYARAADILDKPEYLAHARHGLN
YLLNVHLQADERFAWTLKSHRPEDMTQQAYGYAFALLAFAACRKSGILKDNNKLLWIYNLLEQRFWQPEYGLYADEIGAD
GVLSDYRGQNANMHLCEAMIAAFEASGEGRFLDRAMEIADKIANRQAALTGGIIWEHFTPGFAINWEYNKDDPKNLYRPW
GFQGGHQTEWAKLLLSLARHSHQPWLISRAKTLFDTAFEKSWDKEHGGMVYGFGPNGDWCDDDKYFWVQAESFAAAAMLY
QQTGEQKYLDAYNALWNYAWQHFVDHEHGAWFRVLYRDNRKYSNEKSTAGAKCDYHTLGACFDSLRDLT

Sequences:

>Translated_389_residues
MKFYNRDFLLSHSQSILDFYDPRVLDASGGYFHNYYDDGSLFEPGFRQLVSSCRITVNYARAADILDKPEYLAHARHGLN
YLLNVHLQADERFAWTLKSHRPEDMTQQAYGYAFALLAFAACRKSGILKDNNKLLWIYNLLEQRFWQPEYGLYADEIGAD
GVLSDYRGQNANMHLCEAMIAAFEASGEGRFLDRAMEIADKIANRQAALTGGIIWEHFTPGFAINWEYNKDDPKNLYRPW
GFQGGHQTEWAKLLLSLARHSHQPWLISRAKTLFDTAFEKSWDKEHGGMVYGFGPNGDWCDDDKYFWVQAESFAAAAMLY
QQTGEQKYLDAYNALWNYAWQHFVDHEHGAWFRVLYRDNRKYSNEKSTAGAKCDYHTLGACFDSLRDLT
>Mature_389_residues
MKFYNRDFLLSHSQSILDFYDPRVLDASGGYFHNYYDDGSLFEPGFRQLVSSCRITVNYARAADILDKPEYLAHARHGLN
YLLNVHLQADERFAWTLKSHRPEDMTQQAYGYAFALLAFAACRKSGILKDNNKLLWIYNLLEQRFWQPEYGLYADEIGAD
GVLSDYRGQNANMHLCEAMIAAFEASGEGRFLDRAMEIADKIANRQAALTGGIIWEHFTPGFAINWEYNKDDPKNLYRPW
GFQGGHQTEWAKLLLSLARHSHQPWLISRAKTLFDTAFEKSWDKEHGGMVYGFGPNGDWCDDDKYFWVQAESFAAAAMLY
QQTGEQKYLDAYNALWNYAWQHFVDHEHGAWFRVLYRDNRKYSNEKSTAGAKCDYHTLGACFDSLRDLT

Specific function: Unknown

COG id: COG2942

COG function: function code G; N-acyl-D-glucosamine 2-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acylglucosamine 2-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082342, Length=392, Percent_Identity=27.5510204081633, Blast_Score=128, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR012341
- InterPro:   IPR010819 [H]

Pfam domain/function: PF07221 GlcNAc_2-epim [H]

EC number: 5.-.-.- [C]

Molecular weight: Translated: 45059; Mature: 45059

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFYNRDFLLSHSQSILDFYDPRVLDASGGYFHNYYDDGSLFEPGFRQLVSSCRITVNYA
CCCCCCCHHHHCCHHHHHHCCCEEEECCCCEEECCCCCCCCCCHHHHHHHHHCEEEEEHH
RAADILDKPEYLAHARHGLNYLLNVHLQADERFAWTLKSHRPEDMTQQAYGYAFALLAFA
HHHHHHCCHHHHHHHHHCCEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
ACRKSGILKDNNKLLWIYNLLEQRFWQPEYGLYADEIGADGVLSDYRGQNANMHLCEAMI
HHHHCCCEECCCCEEEHHHHHHHHCCCCCCCCCHHHCCCCCCHHHCCCCCCCHHHHHHHH
AAFEASGEGRFLDRAMEIADKIANRQAALTGGIIWEHFTPGFAINWEYNKDDPKNLYRPW
HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCCEEEECCCCCEEEEEECCCCCHHHHCCCC
GFQGGHQTEWAKLLLSLARHSHQPWLISRAKTLFDTAFEKSWDKEHGGMVYGFGPNGDWC
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
DDDKYFWVQAESFAAAAMLYQQTGEQKYLDAYNALWNYAWQHFVDHEHGAWFRVLYRDNR
CCCCEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
KYSNEKSTAGAKCDYHTLGACFDSLRDLT
CCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFYNRDFLLSHSQSILDFYDPRVLDASGGYFHNYYDDGSLFEPGFRQLVSSCRITVNYA
CCCCCCCHHHHCCHHHHHHCCCEEEECCCCEEECCCCCCCCCCHHHHHHHHHCEEEEEHH
RAADILDKPEYLAHARHGLNYLLNVHLQADERFAWTLKSHRPEDMTQQAYGYAFALLAFA
HHHHHHCCHHHHHHHHHCCEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
ACRKSGILKDNNKLLWIYNLLEQRFWQPEYGLYADEIGADGVLSDYRGQNANMHLCEAMI
HHHHCCCEECCCCEEEHHHHHHHHCCCCCCCCCHHHCCCCCCHHHCCCCCCCHHHHHHHH
AAFEASGEGRFLDRAMEIADKIANRQAALTGGIIWEHFTPGFAINWEYNKDDPKNLYRPW
HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHCCEEEECCCCCEEEEEECCCCCHHHHCCCC
GFQGGHQTEWAKLLLSLARHSHQPWLISRAKTLFDTAFEKSWDKEHGGMVYGFGPNGDWC
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
DDDKYFWVQAESFAAAAMLYQQTGEQKYLDAYNALWNYAWQHFVDHEHGAWFRVLYRDNR
CCCCEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
KYSNEKSTAGAKCDYHTLGACFDSLRDLT
CCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8346018; 9278503 [H]