| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773666
Identifier: 119773666
GI number: 119773666
Start: 649686
End: 650492
Strand: Reverse
Name: 119773666
Synonym: Sama_0526
Alternate gene names: NA
Gene position: 650492-649686 (Counterclockwise)
Preceding gene: 119773667
Following gene: 119773663
Centisome position: 15.11
GC content: 52.79
Gene sequence:
>807_bases ATGCTCAGAAGCCGAATGAAACAATACCTCACCTTCTTCAGCCTGTTGCTGCTCGCCAGCTCCCTGTCGGCAAACGGACA GCCCGGTCAGTCGGTAAGGGTGTGCAGTCTCAATCTGGCACCCCAGACCATGCTGAATGAGCAGGGGCAGCCCGACGGTT ATGCAGTGAAGATTCTGGAAGCCATAGCGGCGCGGCTTAATTGGCGGCTCAGCATTCAATACTACCCCTGGGTCAGGGTG GTACACCTGGCGCAGCAGGGCGACTGCGACATAGTGCTGACGGTGCTGATGCGCGAAGATTATGCCCAATACATGGCGTT TCCAGCCGAGCCCATACTGATGCAAAGGAACGTGATAGCCGTGAGGAAGGGCAGCCACATGCAGTACGACGGCAACATGG CCAATTTTGTCCGTAAACACAGCATTGCCATGTATCGGGACAAAGCCATTAACGATGAGTTTCAACAGTATCGGGATGCG CCCTGGGCCAATATTCAGCTGACCAAGGATGCTGAAACCAACTTCAAAATGCTGTTGCTGAACAGAGTGGAGGCCGTGTT CGAGAATGACCTGACAGCCATTATGGTACTCAAGAAATTAAACCAGCTCGAACAGGTGACCCTGTTACACCCGCCGCTGA ATGAGACACCCGCCTATATTACGTTCCCCAAAGCGGGCAAATTGGCGCACAGTACAGCCCTATTTGATAAAGCCATGGCC GATTTCAAACAAACCCAAACATACCAGGCCTTGCAGATGGAGTATTTGGGGACATCCGAACCGGACTCATCTGTCAAACA GCCTTAA
Upstream 100 bases:
>100_bases GAGAACTACACTTTAGGAGTAGCCATTCTGGGCCCCCTAATCGATGACACTATTGTCCAGGCCACACTCCATAATGTAAG CGCCAATCCGGGTTGAATTC
Downstream 100 bases:
>100_bases TAAAGCGGGCAATGTGCTCATAGGTCCGCAAACACTCTTCGGCCACCAGATCGTGAAGCAGCATGTAGGCGTGGATCATA TCCTCCAGCCCGTGATGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MLRSRMKQYLTFFSLLLLASSLSANGQPGQSVRVCSLNLAPQTMLNEQGQPDGYAVKILEAIAARLNWRLSIQYYPWVRV VHLAQQGDCDIVLTVLMREDYAQYMAFPAEPILMQRNVIAVRKGSHMQYDGNMANFVRKHSIAMYRDKAINDEFQQYRDA PWANIQLTKDAETNFKMLLLNRVEAVFENDLTAIMVLKKLNQLEQVTLLHPPLNETPAYITFPKAGKLAHSTALFDKAMA DFKQTQTYQALQMEYLGTSEPDSSVKQP
Sequences:
>Translated_268_residues MLRSRMKQYLTFFSLLLLASSLSANGQPGQSVRVCSLNLAPQTMLNEQGQPDGYAVKILEAIAARLNWRLSIQYYPWVRV VHLAQQGDCDIVLTVLMREDYAQYMAFPAEPILMQRNVIAVRKGSHMQYDGNMANFVRKHSIAMYRDKAINDEFQQYRDA PWANIQLTKDAETNFKMLLLNRVEAVFENDLTAIMVLKKLNQLEQVTLLHPPLNETPAYITFPKAGKLAHSTALFDKAMA DFKQTQTYQALQMEYLGTSEPDSSVKQP >Mature_268_residues MLRSRMKQYLTFFSLLLLASSLSANGQPGQSVRVCSLNLAPQTMLNEQGQPDGYAVKILEAIAARLNWRLSIQYYPWVRV VHLAQQGDCDIVLTVLMREDYAQYMAFPAEPILMQRNVIAVRKGSHMQYDGNMANFVRKHSIAMYRDKAINDEFQQYRDA PWANIQLTKDAETNFKMLLLNRVEAVFENDLTAIMVLKKLNQLEQVTLLHPPLNETPAYITFPKAGKLAHSTALFDKAMA DFKQTQTYQALQMEYLGTSEPDSSVKQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30572; Mature: 30572
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRSRMKQYLTFFSLLLLASSLSANGQPGQSVRVCSLNLAPQTMLNEQGQPDGYAVKILE CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCHHHHHHH AIAARLNWRLSIQYYPWVRVVHLAQQGDCDIVLTVLMREDYAQYMAFPAEPILMQRNVIA HHHHHCCEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEE VRKGSHMQYDGNMANFVRKHSIAMYRDKAINDEFQQYRDAPWANIQLTKDAETNFKMLLL EECCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHH NRVEAVFENDLTAIMVLKKLNQLEQVTLLHPPLNETPAYITFPKAGKLAHSTALFDKAMA HHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHH DFKQTQTYQALQMEYLGTSEPDSSVKQP HHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MLRSRMKQYLTFFSLLLLASSLSANGQPGQSVRVCSLNLAPQTMLNEQGQPDGYAVKILE CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCHHHHHHH AIAARLNWRLSIQYYPWVRVVHLAQQGDCDIVLTVLMREDYAQYMAFPAEPILMQRNVIA HHHHHCCEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEE VRKGSHMQYDGNMANFVRKHSIAMYRDKAINDEFQQYRDAPWANIQLTKDAETNFKMLLL EECCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHH NRVEAVFENDLTAIMVLKKLNQLEQVTLLHPPLNETPAYITFPKAGKLAHSTALFDKAMA HHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHH DFKQTQTYQALQMEYLGTSEPDSSVKQP HHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA