Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
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Accession | NC_008700 |
Length | 4,306,142 |
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The map label for this gene is 119773586
Identifier: 119773586
GI number: 119773586
Start: 552004
End: 552729
Strand: Direct
Name: 119773586
Synonym: Sama_0446
Alternate gene names: NA
Gene position: 552004-552729 (Clockwise)
Preceding gene: 119773579
Following gene: 119773587
Centisome position: 12.82
GC content: 56.61
Gene sequence:
>726_bases ATGACAAGACTTTTCATCCTTGCCTTGCTGTTGATGGTTCAGGCCCTGACGCCTGCACAGGCGCGTTTATCCCATGTCAG TATCAATAAAAGCCAATTCACTTTGGGCGAATACCCGCGTCTGCGAGTCAATATTGTGTCTGAGCGCAGTGACCTGTCGC GGCTGGAGTTTGTGGTGCGCCAGGGTACCCGGGAAGAAAAGCTCATGGTTGAGCCCCTGAACAACTTTATGTTGTTGCTG TTTGGCGTCGACAATGTGACAGACGCCAATGCCGAACTGGTGGTGCGCGAATACGTGGTCAATCAGTGGCAGGAATATAA GGTTATCCCGCTGTTTGGTGGCACGGAGCGAGTCGCGAAAGCACCGAGCGCGTCCCCGAGAAAGGCCGCCGAGCTGTTGG CTCCCGAGTCCGTACCTGTGGCGAAACCCACTCCCGTGCAAATGTCGCTTGCCAGCGCGGCCAACGACAGCGGTGGCTGC GCCGTTGAGTACCAGCCAGGGGAGACCCTCTGGCGCATTGCCAGTCGTTATGCGCCCCGCTGGAATACCAACGTATACAG CACCATGATGGCATTGTTTGATGCCAATCCCCGCGCCTTTACCAAGGGCAAAATCAGTGGCCTCAAGCAAGATGCTAAGC TGGAGTGCCCATCACCGGCGCTGCTGGGGCGTTATCCGGATACCCGAGAGGCGAGACGCATTTTTGAAGCCAAAAGCCTG GAGTGA
Upstream 100 bases:
>100_bases TTGCCTCTAGTGTAACGGCAGCGTGGGAACTCAGCCACAGCTAATGCAGCCCAGTAACTATGCAAGAAAAACAATGCAAG AAAACGATGCAGGAAAAACA
Downstream 100 bases:
>100_bases ATCGCTGGCTTTTTAAGCGACGATCTGCTTGTCAGTATGGGTGAGATCCTGTACCATTCTGCGCCCTAACATACTTGTTA TTAACTGCATGTGGTGTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MTRLFILALLLMVQALTPAQARLSHVSINKSQFTLGEYPRLRVNIVSERSDLSRLEFVVRQGTREEKLMVEPLNNFMLLL FGVDNVTDANAELVVREYVVNQWQEYKVIPLFGGTERVAKAPSASPRKAAELLAPESVPVAKPTPVQMSLASAANDSGGC AVEYQPGETLWRIASRYAPRWNTNVYSTMMALFDANPRAFTKGKISGLKQDAKLECPSPALLGRYPDTREARRIFEAKSL E
Sequences:
>Translated_241_residues MTRLFILALLLMVQALTPAQARLSHVSINKSQFTLGEYPRLRVNIVSERSDLSRLEFVVRQGTREEKLMVEPLNNFMLLL FGVDNVTDANAELVVREYVVNQWQEYKVIPLFGGTERVAKAPSASPRKAAELLAPESVPVAKPTPVQMSLASAANDSGGC AVEYQPGETLWRIASRYAPRWNTNVYSTMMALFDANPRAFTKGKISGLKQDAKLECPSPALLGRYPDTREARRIFEAKSL E >Mature_240_residues TRLFILALLLMVQALTPAQARLSHVSINKSQFTLGEYPRLRVNIVSERSDLSRLEFVVRQGTREEKLMVEPLNNFMLLLF GVDNVTDANAELVVREYVVNQWQEYKVIPLFGGTERVAKAPSASPRKAAELLAPESVPVAKPTPVQMSLASAANDSGGCA VEYQPGETLWRIASRYAPRWNTNVYSTMMALFDANPRAFTKGKISGLKQDAKLECPSPALLGRYPDTREARRIFEAKSLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26887; Mature: 26756
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLFILALLLMVQALTPAQARLSHVSINKSQFTLGEYPRLRVNIVSERSDLSRLEFVVR CHHHHHHHHHHHHHHCCCHHHHHHHEECCCCEEECCCCCEEEEEEECCHHHHHHHHHHHH QGTREEKLMVEPLNNFMLLLFGVDNVTDANAELVVREYVVNQWQEYKVIPLFGGTERVAK CCCCCHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHCEEEEEEECCHHHHHC APSASPRKAAELLAPESVPVAKPTPVQMSLASAANDSGGCAVEYQPGETLWRIASRYAPR CCCCCHHHHHHHHCCCCCCCCCCCCCEEEHHHCCCCCCCEEEEECCCHHHHHHHHHCCCC WNTNVYSTMMALFDANPRAFTKGKISGLKQDAKLECPSPALLGRYPDTREARRIFEAKSL CCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCC E C >Mature Secondary Structure TRLFILALLLMVQALTPAQARLSHVSINKSQFTLGEYPRLRVNIVSERSDLSRLEFVVR HHHHHHHHHHHHHHCCCHHHHHHHEECCCCEEECCCCCEEEEEEECCHHHHHHHHHHHH QGTREEKLMVEPLNNFMLLLFGVDNVTDANAELVVREYVVNQWQEYKVIPLFGGTERVAK CCCCCHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHCEEEEEEECCHHHHHC APSASPRKAAELLAPESVPVAKPTPVQMSLASAANDSGGCAVEYQPGETLWRIASRYAPR CCCCCHHHHHHHHCCCCCCCCCCCCCEEEHHHCCCCCCCEEEEECCCHHHHHHHHHCCCC WNTNVYSTMMALFDANPRAFTKGKISGLKQDAKLECPSPALLGRYPDTREARRIFEAKSL CCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCC E C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA