| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773567
Identifier: 119773567
GI number: 119773567
Start: 524243
End: 524767
Strand: Direct
Name: 119773567
Synonym: Sama_0427
Alternate gene names: NA
Gene position: 524243-524767 (Clockwise)
Preceding gene: 119773563
Following gene: 119773570
Centisome position: 12.17
GC content: 60.76
Gene sequence:
>525_bases ATGACAAAGCCTTGGTGTTCTGTCGCTGTGGTGGCACTGCTGGCCCTGTCCGCCGCACCCTTGCCGGTATTGGCTGATCT AAGCACCTCGGTGTGGATTGGCAACCACAATGGATTGGGACTGAGTTTTTCCAGCGGCGGTTATGGCCACTGGCGCTACC CGGGGGCGTACTGGAACGGCGGCTGGGGTTGGCGCGACCCCATTTATCGGGATCCCTTTTGGCGTTATAACGACAGCTGG TACTGGCAACACAGGGCCTGGGAGCAGGAACGTCAGGCGCAGCGGGATGCACGCGCCGAGCGAGAGCGCCAGCGGCTGAT GACGCAGCCAAGGGTGGTGCCGCCAGCCATGATCACCCGTTCCCGGGAACAGGTTGAGGGCTTGGCCTCTTTGCCGCAAA ACGCCCGGGTGCTGATGGTGGATGGAAAACCTCAGTATGAATGGCAGGGGCAGAGATACAGTTTCGACTGGCATACCCAG CGTTATATGCCGGTGCCGCCAGTGCCCTCAAGCGAGTCCAGATAA
Upstream 100 bases:
>100_bases CATATGGAAATGCCTCTGTTTGCAAAACCCTTTTGTGGCGCGCACTATACCACTAAAGCCCCGTTGGCGGAATCAAAAGC GCCCCGGGCAGGAGGGGAGT
Downstream 100 bases:
>100_bases TAGAAAACGCCGTCCACTGGACGGCGTTTTCAGTTTAAACCGGTTTGCTTATCAGAAGCTTACGGTTTCAATGTCGGAGC AACCACCATCGGAGTTGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MTKPWCSVAVVALLALSAAPLPVLADLSTSVWIGNHNGLGLSFSSGGYGHWRYPGAYWNGGWGWRDPIYRDPFWRYNDSW YWQHRAWEQERQAQRDARAERERQRLMTQPRVVPPAMITRSREQVEGLASLPQNARVLMVDGKPQYEWQGQRYSFDWHTQ RYMPVPPVPSSESR
Sequences:
>Translated_174_residues MTKPWCSVAVVALLALSAAPLPVLADLSTSVWIGNHNGLGLSFSSGGYGHWRYPGAYWNGGWGWRDPIYRDPFWRYNDSW YWQHRAWEQERQAQRDARAERERQRLMTQPRVVPPAMITRSREQVEGLASLPQNARVLMVDGKPQYEWQGQRYSFDWHTQ RYMPVPPVPSSESR >Mature_173_residues TKPWCSVAVVALLALSAAPLPVLADLSTSVWIGNHNGLGLSFSSGGYGHWRYPGAYWNGGWGWRDPIYRDPFWRYNDSWY WQHRAWEQERQAQRDARAERERQRLMTQPRVVPPAMITRSREQVEGLASLPQNARVLMVDGKPQYEWQGQRYSFDWHTQR YMPVPPVPSSESR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20290; Mature: 20159
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKPWCSVAVVALLALSAAPLPVLADLSTSVWIGNHNGLGLSFSSGGYGHWRYPGAYWNG CCCCHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCCCEEEECCCCCCCEECCCCCCCC GWGWRDPIYRDPFWRYNDSWYWQHRAWEQERQAQRDARAERERQRLMTQPRVVPPAMITR CCCCCCCCCCCCCEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC SREQVEGLASLPQNARVLMVDGKPQYEWQGQRYSFDWHTQRYMPVPPVPSSESR CHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TKPWCSVAVVALLALSAAPLPVLADLSTSVWIGNHNGLGLSFSSGGYGHWRYPGAYWNG CCCHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCCCEEEECCCCCCCEECCCCCCCC GWGWRDPIYRDPFWRYNDSWYWQHRAWEQERQAQRDARAERERQRLMTQPRVVPPAMITR CCCCCCCCCCCCCEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC SREQVEGLASLPQNARVLMVDGKPQYEWQGQRYSFDWHTQRYMPVPPVPSSESR CHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA