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The map label for this gene is rsd [H]

Identifier: 119773527

GI number: 119773527

Start: 478075

End: 478539

Strand: Reverse

Name: rsd [H]

Synonym: Sama_0386

Alternate gene names: 119773527

Gene position: 478539-478075 (Counterclockwise)

Preceding gene: 119773531

Following gene: 119773526

Centisome position: 11.11

GC content: 51.83

Gene sequence:

>465_bases
ATGCTGAGTCAGCTGGAAAAAGCCGAACAAAGATGGGGCGGCGCCAATAAGCTCATTGACCAGTGGCTGGAAAACCGCAG
AAACCTGTTGGTGCATTACTGCCAAATCGCGGGTTTACCTCCCTATGAAGACCGCGCACGTCTTCCCTCCTTCGATCATG
TCAAAGCCTTTTGCGACCTCTTGGTCGATTATGTTTCCGAAGGCCACTTCGAGATTTATAACAAGGTGGTCAGCGCCTGT
GAAACCAATGGCAAGTCAAGCCAGGACATCGCCAAGAACCTGCTTCCCAAAATTCACAACACCACAGATATGGCACTGGA
CTTCAACGACAAGTATACGGGCGTGGATGACGACAATGTGCTGATGCAGCTCGACGAAGATCTCTCCCACCTTGGGGATG
CCATGGAGACCCGCTTCCAGCTGGAAGATCAGCTGCTCGAAGTGCTGCACAGCAAACACTCTTGA

Upstream 100 bases:

>100_bases
CCATTCAATACCTGAGACTGAATGCGTCAAAAATCAGTTGATCAGGACCCGATTTCTCTCCTACAGTAAGAGAACGACAT
CTAAGGAAGAGAGGCCCGAA

Downstream 100 bases:

>100_bases
ATACCTTGCAGATGTTAGACAAAGCCGGCCAGCGCCGGCTTTGTTGTTTCCAGACAGGTTTCAGGCACAAGCTATACATG
CATACCACGCTGCAAGGCGA

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MLSQLEKAEQRWGGANKLIDQWLENRRNLLVHYCQIAGLPPYEDRARLPSFDHVKAFCDLLVDYVSEGHFEIYNKVVSAC
ETNGKSSQDIAKNLLPKIHNTTDMALDFNDKYTGVDDDNVLMQLDEDLSHLGDAMETRFQLEDQLLEVLHSKHS

Sequences:

>Translated_154_residues
MLSQLEKAEQRWGGANKLIDQWLENRRNLLVHYCQIAGLPPYEDRARLPSFDHVKAFCDLLVDYVSEGHFEIYNKVVSAC
ETNGKSSQDIAKNLLPKIHNTTDMALDFNDKYTGVDDDNVLMQLDEDLSHLGDAMETRFQLEDQLLEVLHSKHS
>Mature_154_residues
MLSQLEKAEQRWGGANKLIDQWLENRRNLLVHYCQIAGLPPYEDRARLPSFDHVKAFCDLLVDYVSEGHFEIYNKVVSAC
ETNGKSSQDIAKNLLPKIHNTTDMALDFNDKYTGVDDDNVLMQLDEDLSHLGDAMETRFQLEDQLLEVLHSKHS

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=148, Percent_Identity=37.1621621621622, Blast_Score=100, Evalue=3e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 17692; Mature: 17692

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSQLEKAEQRWGGANKLIDQWLENRRNLLVHYCQIAGLPPYEDRARLPSFDHVKAFCDL
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LVDYVSEGHFEIYNKVVSACETNGKSSQDIAKNLLPKIHNTTDMALDFNDKYTGVDDDNV
HHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHCEEECCCCCCCCCCCHH
LMQLDEDLSHLGDAMETRFQLEDQLLEVLHSKHS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLSQLEKAEQRWGGANKLIDQWLENRRNLLVHYCQIAGLPPYEDRARLPSFDHVKAFCDL
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LVDYVSEGHFEIYNKVVSACETNGKSSQDIAKNLLPKIHNTTDMALDFNDKYTGVDDDNV
HHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHCEEECCCCCCCCCCCHH
LMQLDEDLSHLGDAMETRFQLEDQLLEVLHSKHS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA