| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119773416
Identifier: 119773416
GI number: 119773416
Start: 316580
End: 317083
Strand: Direct
Name: 119773416
Synonym: Sama_0275
Alternate gene names: NA
Gene position: 316580-317083 (Clockwise)
Preceding gene: 119773412
Following gene: 119773417
Centisome position: 7.35
GC content: 51.19
Gene sequence:
>504_bases ATGAACACATATCCACGCAGTTTTTCTCACATCGGTATTTCTGTGCCCGATCTTGAGGCCGCAGTGAAGTTTTACACCGA GGTACTCGGTTGGTATCTCATCATGCCGCCCACCGAGATTGTGGAAGACGACTCCGCCATCGGCGAAATGTGTACCGATG TGTTTGGTGCTGGCTGGGAGCGTTTTCGCATCGCCCACCTGTCCACCGGTGACCGTATCGGGGTTGAGCTGTTCGAGTTT AAAAACCAAGAGAACCCGGAAGACAACTTCGAATACTGGAAAACCGGTATCTTCCATTTCTGCGTGCAGGACCCGGATGT GGAAGGCCTGGCCGAGAAAATCGTTGCCGCCGGTGGTAAAAAGCGCATGAAGGCCCCGCGCTACTATTACCCGGGTGAAA AGCCTTACCGCATGATTTATATGGAAGATCCCTTTGGAAATATCCTTGAGATTTACAGCCACAGTTATGAGCTGCACTAT TCGAGTGGTGCTTATACCGGCTAA
Upstream 100 bases:
>100_bases TCGCATCGGGCAAGGCCCCTGCGTCAGCGCAACGGACCAAGAGTGCGCAAGCAAGACCAGGCGAGCTCAGCCCTTCATTG CAAAGCATACGAGGTTAGCC
Downstream 100 bases:
>100_bases GCGTTTTCAGGCTGCCGCCTTTGGTTGATTTGATTCAGCCGTTACCATTGAGCCCCCAGTTTTCTGGTCCCAGAGCCGAG ACTGCGGGCTTTTTTGTGTC
Product: glyoxalase/bleomycin resistance protein/dioxygenase
Products: NA
Alternate protein names: Glyoxalase Family Protein; Lactoylglutathione Lyase; Lactoylglutathione Lyase Family Protein; Glyoxalase/Bleomycin Resistance Protein; Dioxygenase Superfamily Protein
Number of amino acids: Translated: 167; Mature: 167
Protein sequence:
>167_residues MNTYPRSFSHIGISVPDLEAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGAGWERFRIAHLSTGDRIGVELFEF KNQENPEDNFEYWKTGIFHFCVQDPDVEGLAEKIVAAGGKKRMKAPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYELHY SSGAYTG
Sequences:
>Translated_167_residues MNTYPRSFSHIGISVPDLEAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGAGWERFRIAHLSTGDRIGVELFEF KNQENPEDNFEYWKTGIFHFCVQDPDVEGLAEKIVAAGGKKRMKAPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYELHY SSGAYTG >Mature_167_residues MNTYPRSFSHIGISVPDLEAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGAGWERFRIAHLSTGDRIGVELFEF KNQENPEDNFEYWKTGIFHFCVQDPDVEGLAEKIVAAGGKKRMKAPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYELHY SSGAYTG
Specific function: Unknown
COG id: COG0346
COG function: function code E; Lactoylglutathione lyase and related lyases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19210; Mature: 19210
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTYPRSFSHIGISVPDLEAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGAGWE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCHHHHCCCHHHHHHHHHHHHCCHH RFRIAHLSTGDRIGVELFEFKNQENPEDNFEYWKTGIFHFCVQDPDVEGLAEKIVAAGGK HEEEEECCCCCCCCHHHEECCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCH KRMKAPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYELHYSSGAYTG HHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCEEEEECCCCCCC >Mature Secondary Structure MNTYPRSFSHIGISVPDLEAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGAGWE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCHHHHCCCHHHHHHHHHHHHCCHH RFRIAHLSTGDRIGVELFEFKNQENPEDNFEYWKTGIFHFCVQDPDVEGLAEKIVAAGGK HEEEEECCCCCCCCHHHEECCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCH KRMKAPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYELHYSSGAYTG HHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA