Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is 119717476
Identifier: 119717476
GI number: 119717476
Start: 3454698
End: 3455006
Strand: Reverse
Name: 119717476
Synonym: Noca_3252
Alternate gene names: NA
Gene position: 3455006-3454698 (Counterclockwise)
Preceding gene: 119717477
Following gene: 119717475
Centisome position: 69.3
GC content: 63.43
Gene sequence:
>309_bases ATGAGCGCCGAGGATCTCGAGAAGTACGAGACCGAGATGGAGCTGACCCTCTACCGCGAGTACCGCGACGTGGTCGGCAT CTTCAAGTACGTCGTCGAGACCGACCGCCGCTTCTACCTCTGCAACCAGGTCGACGTGAAGGCCCGCACCGAGGCCGGCG ACGTGTTCTTCGAGGTCTCGATGAGCGACGCGTGGGTCTGGGACATGTACCGCCCGGCCCGCTTCGCCAAGAACGTCAAG GTGCTCACGTTCAAGGACGTCAACGTCGAGGAGCTCAGCCCCTCCGAGATCGACCCGCCGAAGGCCTGA
Upstream 100 bases:
>100_bases GCTTCGTCAACGTCCGGCGGGCCGCGGGGCTCGAGCCGCTGGATCCCGTGCAGAATGGTGAGGAAGCGGTCGAGCTGGTC GAGGTCACGGAGGGAACGAG
Downstream 100 bases:
>100_bases CCGCGCTCCGGCCGGACCAGACCAGTTCCGCCGAATCGGCCGCCGACGTGGTCTACGCCACATAGCCTGTGGTTCGGCGG CCGTGGGGACCGCCGTCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 102; Mature: 101
Protein sequence:
>102_residues MSAEDLEKYETEMELTLYREYRDVVGIFKYVVETDRRFYLCNQVDVKARTEAGDVFFEVSMSDAWVWDMYRPARFAKNVK VLTFKDVNVEELSPSEIDPPKA
Sequences:
>Translated_102_residues MSAEDLEKYETEMELTLYREYRDVVGIFKYVVETDRRFYLCNQVDVKARTEAGDVFFEVSMSDAWVWDMYRPARFAKNVK VLTFKDVNVEELSPSEIDPPKA >Mature_101_residues SAEDLEKYETEMELTLYREYRDVVGIFKYVVETDRRFYLCNQVDVKARTEAGDVFFEVSMSDAWVWDMYRPARFAKNVKV LTFKDVNVEELSPSEIDPPKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019592 [H]
Pfam domain/function: PF10611 DUF2469 [H]
EC number: NA
Molecular weight: Translated: 12062; Mature: 11931
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAEDLEKYETEMELTLYREYRDVVGIFKYVVETDRRFYLCNQVDVKARTEAGDVFFEVS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCEEEEEE MSDAWVWDMYRPARFAKNVKVLTFKDVNVEELSPSEIDPPKA CCCEEEECCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure SAEDLEKYETEMELTLYREYRDVVGIFKYVVETDRRFYLCNQVDVKARTEAGDVFFEVS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCEEEEEE MSDAWVWDMYRPARFAKNVKVLTFKDVNVEELSPSEIDPPKA CCCEEEECCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]