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The map label for this gene is rbfA

Identifier: 119717413

GI number: 119717413

Start: 3387860

End: 3388348

Strand: Reverse

Name: rbfA

Synonym: Noca_3189

Alternate gene names: 119717413

Gene position: 3388348-3387860 (Counterclockwise)

Preceding gene: 119717414

Following gene: 119717412

Centisome position: 67.96

GC content: 71.78

Gene sequence:

>489_bases
ATGAGCAACCCACGCATCCGCAAGATCGCCGACCGGATCCAGGTGGTCGTCGCGGAGATGCTGGAGCGACGGATCAAGGA
CCCGCGGCTCGGGTTCGTGACCGTCACCGACGTCCGGGTCTCGGGGGACAGCCAGCAGGCCACGATCTTCTACACGGTCC
TCGGAGAGGACGACGAGGCGGCCCGTACGGCCAGCGCGGTCGCGCTGGAGTCGGCCAAGGGCCTGCTGCGCTCCGAGGTC
GCCAAGCAGCTCGGGATGCGGCACGCGCCGACCCTGGAGTTCGTGCACGACGCGCTGCCTGAGAGCGCCCGCCAGCTCGA
CGAGGTGCTGGCCCGCGCGAAGGCGCAGGACGAGGCGCTGGCAGCCGGGCGCGGCACGGCGTACGCCGGCGAGGCCGACC
CCTACAAGAAGCCGCGTCCGGCCGACGCCGACGAGCCCGACGACTCCGGCGAACCCGGCGAGTTCGACGGGGTCGATGAC
GACGAGTGA

Upstream 100 bases:

>100_bases
GGCTCGCTGCGCTCGCGGTTCGGCGGGCCGGCTCGCTTCGCTCCCCGGCGTCCAAGCGGCGTCGGGGAGTGTTGTCCGTT
CGTTATGTGAAGGTAGGAAC

Downstream 100 bases:

>100_bases
GGCCGGGCTGGTCGTCGTCGACAAGCCCGGCGGCCTGACCTCGCACGACGTCGTCTCGCGGGTGCGGCGCCTGACCGGCA
CCCGCAAGGTCGGGCACGCG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSNPRIRKIADRIQVVVAEMLERRIKDPRLGFVTVTDVRVSGDSQQATIFYTVLGEDDEAARTASAVALESAKGLLRSEV
AKQLGMRHAPTLEFVHDALPESARQLDEVLARAKAQDEALAAGRGTAYAGEADPYKKPRPADADEPDDSGEPGEFDGVDD
DE

Sequences:

>Translated_162_residues
MSNPRIRKIADRIQVVVAEMLERRIKDPRLGFVTVTDVRVSGDSQQATIFYTVLGEDDEAARTASAVALESAKGLLRSEV
AKQLGMRHAPTLEFVHDALPESARQLDEVLARAKAQDEALAAGRGTAYAGEADPYKKPRPADADEPDDSGEPGEFDGVDD
DE
>Mature_161_residues
SNPRIRKIADRIQVVVAEMLERRIKDPRLGFVTVTDVRVSGDSQQATIFYTVLGEDDEAARTASAVALESAKGLLRSEVA
KQLGMRHAPTLEFVHDALPESARQLDEVLARAKAQDEALAAGRGTAYAGEADPYKKPRPADADEPDDSGEPGEFDGVDDD
E

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=37.0689655172414, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_NOCSJ (A1SLK6)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_924378.1
- ProteinModelPortal:   A1SLK6
- SMR:   A1SLK6
- STRING:   A1SLK6
- GeneID:   4599052
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_3189
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   TGDLHDA
- PhylomeDB:   A1SLK6
- ProtClustDB:   PRK00521
- BioCyc:   NSP35761:NOCA_3189-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 17564; Mature: 17432

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPRIRKIADRIQVVVAEMLERRIKDPRLGFVTVTDVRVSGDSQQATIFYTVLGEDDEA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHH
ARTASAVALESAKGLLRSEVAKQLGMRHAPTLEFVHDALPESARQLDEVLARAKAQDEAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AAGRGTAYAGEADPYKKPRPADADEPDDSGEPGEFDGVDDDE
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNPRIRKIADRIQVVVAEMLERRIKDPRLGFVTVTDVRVSGDSQQATIFYTVLGEDDEA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHH
ARTASAVALESAKGLLRSEVAKQLGMRHAPTLEFVHDALPESARQLDEVLARAKAQDEAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AAGRGTAYAGEADPYKKPRPADADEPDDSGEPGEFDGVDDDE
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA