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The map label for this gene is ybdK [C]

Identifier: 119717194

GI number: 119717194

Start: 3154962

End: 3156110

Strand: Reverse

Name: ybdK [C]

Synonym: Noca_2970

Alternate gene names: 119717194

Gene position: 3156110-3154962 (Counterclockwise)

Preceding gene: 119717195

Following gene: 119717193

Centisome position: 63.3

GC content: 74.85

Gene sequence:

>1149_bases
ATGGTCCGCAAGCTCGGCATCGAGGAAGAGCTGCTGCTCTTCGACCCCGAGAGCGGGGAGGTGGTTCCTGCTGCGCCGTC
GGTCCTCAAGGAGTTCCGCGAGCACGGGCCCGGCCGGCAGCGGGCCCGGGCGGCCACCGACGAGCTGGACCAGGAGCTGT
TCCGCCACCAGCTCGAGACCCGCACGGACCCGGTCCGCCGGGCCGCCGACGCGCTCGACCAGCTGGTCGCTGCCCGCCGG
ACCGCCGGTGAGGCGGCACGGGCTGCCGGGTACGCGGCCGGGGCGTGCGGGATCGTCCCGCTCGGTGGCGACCGTTCGGT
GGTGAGCCCCAACGACCGCTACCGCGACATGGTGGACACCTACGGTGAGATCGCGAGGACCGGCGGCACCTGCGGCATGC
ACGTGCACGTCGACATCGGCTCCGACGAGGAGGGCGTCGCGGTGGTCGACCGGATCGCGCCGTGGCTGCCGGTGCTGGTG
GCGCTCGCCGCCAACTCGCCGTACGTCGAAGGCCGGGACTCGGGCTATGCCTCGTGGCGGGCCCAGGTGTGGGCGCGCTG
GCCCAGTGCCGGGCCCACCGAGCAGTTCGGCTCGGTCGCGGGCTACCGCGAGGTGTGCCGGATGCTCCTGGACGTCGGGG
CCGCCCGCGACCCCGGGATGCTCTACTTCGACGCCCGGCTCTCGACCGGGCAGCCCACCGTCGAGGTGCGGGTGTGCGAC
GTGGGCACCGATCCGGCCGTTGCGGTGACCATCGGGGCACTGGTCCGAGCGCTGGTCGAGACCGCGGCCGAGGAATGGGC
CGACGGGCGCCCGGCAGCGCACTGGCGGGCCGAGGCGTTGCGCGCCGCGCACTGGAGGGCGTCCCGGTTCGGGATGGCCG
ACTCGTTGGTGCACCCCCTCGCGCGTGGGCTGCGGCCGGCTCGGTCGGTCGTGGCGGCGCTGGTCGAGGCGGTCGAGCCG
GCCCTGGCCGCCGCCGGCGACCTCGAGCTGGTCGACGTCCAGCTCGAGCGGGCGGTCAACGACAACGGCGCCACCCGCCA
GCGCGCCGCCTTCGAGCGCACCGGCTCCGTGCGCGGCGTCGTCGACGACGTGATCGCTCGCACGGAGGCGTCCTGGCAGG
ACCACGACAGCCACGCCGGAAGGCTCTAG

Upstream 100 bases:

>100_bases
AGGGTGGGTGGTCGCGGCTCCTCGCGCGCCCGACGGAGCGCGTCCGTGACCTGGGAGAGAGGGGTGAGTGACCGGGAACG
CAGCGGGGTACTCGTCGGCC

Downstream 100 bases:

>100_bases
GGTCGGATCATGGGCGAGGAGGTCGAGGCTCAGGAGTTCTCCCGGGCCGATCGCACGCGGCACCGCGAGAAGGTGCGGCG
CAACCTCGATGTGTTCGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MVRKLGIEEELLLFDPESGEVVPAAPSVLKEFREHGPGRQRARAATDELDQELFRHQLETRTDPVRRAADALDQLVAARR
TAGEAARAAGYAAGACGIVPLGGDRSVVSPNDRYRDMVDTYGEIARTGGTCGMHVHVDIGSDEEGVAVVDRIAPWLPVLV
ALAANSPYVEGRDSGYASWRAQVWARWPSAGPTEQFGSVAGYREVCRMLLDVGAARDPGMLYFDARLSTGQPTVEVRVCD
VGTDPAVAVTIGALVRALVETAAEEWADGRPAAHWRAEALRAAHWRASRFGMADSLVHPLARGLRPARSVVAALVEAVEP
ALAAAGDLELVDVQLERAVNDNGATRQRAAFERTGSVRGVVDDVIARTEASWQDHDSHAGRL

Sequences:

>Translated_382_residues
MVRKLGIEEELLLFDPESGEVVPAAPSVLKEFREHGPGRQRARAATDELDQELFRHQLETRTDPVRRAADALDQLVAARR
TAGEAARAAGYAAGACGIVPLGGDRSVVSPNDRYRDMVDTYGEIARTGGTCGMHVHVDIGSDEEGVAVVDRIAPWLPVLV
ALAANSPYVEGRDSGYASWRAQVWARWPSAGPTEQFGSVAGYREVCRMLLDVGAARDPGMLYFDARLSTGQPTVEVRVCD
VGTDPAVAVTIGALVRALVETAAEEWADGRPAAHWRAEALRAAHWRASRFGMADSLVHPLARGLRPARSVVAALVEAVEP
ALAAAGDLELVDVQLERAVNDNGATRQRAAFERTGSVRGVVDDVIARTEASWQDHDSHAGRL
>Mature_382_residues
MVRKLGIEEELLLFDPESGEVVPAAPSVLKEFREHGPGRQRARAATDELDQELFRHQLETRTDPVRRAADALDQLVAARR
TAGEAARAAGYAAGACGIVPLGGDRSVVSPNDRYRDMVDTYGEIARTGGTCGMHVHVDIGSDEEGVAVVDRIAPWLPVLV
ALAANSPYVEGRDSGYASWRAQVWARWPSAGPTEQFGSVAGYREVCRMLLDVGAARDPGMLYFDARLSTGQPTVEVRVCD
VGTDPAVAVTIGALVRALVETAAEEWADGRPAAHWRAEALRAAHWRASRFGMADSLVHPLARGLRPARSVVAALVEAVEP
ALAAAGDLELVDVQLERAVNDNGATRQRAAFERTGSVRGVVDDVIARTEASWQDHDSHAGRL

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=363, Percent_Identity=23.9669421487603, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL1_NOCSJ (A1SKY7)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_924159.1
- ProteinModelPortal:   A1SKY7
- SMR:   A1SKY7
- STRING:   A1SKY7
- GeneID:   4595754
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_2970
- eggNOG:   COG2170
- HOGENOM:   HBG564677
- OMA:   GMIAHEQ
- PhylomeDB:   A1SKY7
- BioCyc:   NSP35761:NOCA_2970-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 41061; Mature: 41061

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRKLGIEEELLLFDPESGEVVPAAPSVLKEFREHGPGRQRARAATDELDQELFRHQLET
CCCCCCCCCCEEEECCCCCCEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
RTDPVRRAADALDQLVAARRTAGEAARAAGYAAGACGIVPLGGDRSVVSPNDRYRDMVDT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHH
YGEIARTGGTCGMHVHVDIGSDEEGVAVVDRIAPWLPVLVALAANSPYVEGRDSGYASWR
HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
AQVWARWPSAGPTEQFGSVAGYREVCRMLLDVGAARDPGMLYFDARLSTGQPTVEVRVCD
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEEE
VGTDPAVAVTIGALVRALVETAAEEWADGRPAAHWRAEALRAAHWRASRFGMADSLVHPL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ARGLRPARSVVAALVEAVEPALAAAGDLELVDVQLERAVNDNGATRQRAAFERTGSVRGV
HHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCHHHHHHHHHCCCHHHH
VDDVIARTEASWQDHDSHAGRL
HHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MVRKLGIEEELLLFDPESGEVVPAAPSVLKEFREHGPGRQRARAATDELDQELFRHQLET
CCCCCCCCCCEEEECCCCCCEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
RTDPVRRAADALDQLVAARRTAGEAARAAGYAAGACGIVPLGGDRSVVSPNDRYRDMVDT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHH
YGEIARTGGTCGMHVHVDIGSDEEGVAVVDRIAPWLPVLVALAANSPYVEGRDSGYASWR
HHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
AQVWARWPSAGPTEQFGSVAGYREVCRMLLDVGAARDPGMLYFDARLSTGQPTVEVRVCD
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEEE
VGTDPAVAVTIGALVRALVETAAEEWADGRPAAHWRAEALRAAHWRASRFGMADSLVHPL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ARGLRPARSVVAALVEAVEPALAAAGDLELVDVQLERAVNDNGATRQRAAFERTGSVRGV
HHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCHHHHHHHHHCCCHHHH
VDDVIARTEASWQDHDSHAGRL
HHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA