Definition | Nocardioides sp. JS614 chromosome, complete genome. |
---|---|
Accession | NC_008699 |
Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119717171
Identifier: 119717171
GI number: 119717171
Start: 3129808
End: 3130434
Strand: Reverse
Name: 119717171
Synonym: Noca_2947
Alternate gene names: NA
Gene position: 3130434-3129808 (Counterclockwise)
Preceding gene: 119717172
Following gene: 119717170
Centisome position: 62.79
GC content: 68.1
Gene sequence:
>627_bases ATGGTCATTTCGGACGCCCAGCGCTTCCTCTTCGTGCACGTGCAGAAGACGGGCGGCTCGACCATCGACAAGCGCCTCGA CGACGTGCTGCCCGACGCCCGCGGCGTCAAGGGGCTGGACCGGCACGCGATGCTCGGCAAGATCCTGCAGACCGAGCCGG CGCTCGCGTCGTACTGGATCGTCGGCTACGTGCGGAACCCGTTCGCGCGGCTGCTGTCCTGGTACCGGATGGTGGAACGG CTCGAGGACCGGGCGGCCAAGGGCCGGAAGGGCTCACAGCAGTTCTTCCAGGGCAAGTCGTTCATCAAGGCGGTCGCCGA GACCTACCCGGACTTCGAGAGCTTCATCCTCAAGGGCACCGAGGACTGGCCGCGGCTGCGCACGCCGCAGATCAACTACC TGACCACCAAGGCCGGCCGCCGGGCCGACTTCATCGGCCGGCAGGAGAGCCTGGAGGCCGACCTGCGGGCGGTGTTTGCC CGCTTCGAGCTGCCCTGGGAGCCGCTGCAGAGCGTGAACGTCGACCGGCACCGCCCCGACTACCGTGAGCTGTACACCCA GTCGATGCGGCGCCGGGTCGAGGACGTCTTCGCCCGCGACCTTGCCGCCTTCGACTACAGCTTCTGA
Upstream 100 bases:
>100_bases CGGACCCCCGCTCGGACTGGTTCGTGCGGCGGATGCCGATGCCGCCCGGTGACACGCTGCCCTCGTAGGTCGCGTCCCGT TGGCACCGTAGGATCCGGCC
Downstream 100 bases:
>100_bases GCTGCCTCCACCGGGGCCCGTCCGGGCCCCGTGACAGACTGCAGGCATGCGGAGCAGCAGGATCGACGAGGACCACGACC GGGCTCTCGAGCTCAGGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MVISDAQRFLFVHVQKTGGSTIDKRLDDVLPDARGVKGLDRHAMLGKILQTEPALASYWIVGYVRNPFARLLSWYRMVER LEDRAAKGRKGSQQFFQGKSFIKAVAETYPDFESFILKGTEDWPRLRTPQINYLTTKAGRRADFIGRQESLEADLRAVFA RFELPWEPLQSVNVDRHRPDYRELYTQSMRRRVEDVFARDLAAFDYSF
Sequences:
>Translated_208_residues MVISDAQRFLFVHVQKTGGSTIDKRLDDVLPDARGVKGLDRHAMLGKILQTEPALASYWIVGYVRNPFARLLSWYRMVER LEDRAAKGRKGSQQFFQGKSFIKAVAETYPDFESFILKGTEDWPRLRTPQINYLTTKAGRRADFIGRQESLEADLRAVFA RFELPWEPLQSVNVDRHRPDYRELYTQSMRRRVEDVFARDLAAFDYSF >Mature_208_residues MVISDAQRFLFVHVQKTGGSTIDKRLDDVLPDARGVKGLDRHAMLGKILQTEPALASYWIVGYVRNPFARLLSWYRMVER LEDRAAKGRKGSQQFFQGKSFIKAVAETYPDFESFILKGTEDWPRLRTPQINYLTTKAGRRADFIGRQESLEADLRAVFA RFELPWEPLQSVNVDRHRPDYRELYTQSMRRRVEDVFARDLAAFDYSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24259; Mature: 24259
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVISDAQRFLFVHVQKTGGSTIDKRLDDVLPDARGVKGLDRHAMLGKILQTEPALASYWI CCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH VGYVRNPFARLLSWYRMVERLEDRAAKGRKGSQQFFQGKSFIKAVAETYPDFESFILKGT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCC EDWPRLRTPQINYLTTKAGRRADFIGRQESLEADLRAVFARFELPWEPLQSVNVDRHRPD CCCCCCCCCCCCEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCH YRELYTQSMRRRVEDVFARDLAAFDYSF HHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MVISDAQRFLFVHVQKTGGSTIDKRLDDVLPDARGVKGLDRHAMLGKILQTEPALASYWI CCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH VGYVRNPFARLLSWYRMVERLEDRAAKGRKGSQQFFQGKSFIKAVAETYPDFESFILKGT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCC EDWPRLRTPQINYLTTKAGRRADFIGRQESLEADLRAVFARFELPWEPLQSVNVDRHRPD CCCCCCCCCCCCEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCH YRELYTQSMRRRVEDVFARDLAAFDYSF HHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA