Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is hemH [H]
Identifier: 119717137
GI number: 119717137
Start: 3093357
End: 3094457
Strand: Reverse
Name: hemH [H]
Synonym: Noca_2913
Alternate gene names: 119717137
Gene position: 3094457-3093357 (Counterclockwise)
Preceding gene: 119717139
Following gene: 119717136
Centisome position: 62.06
GC content: 74.11
Gene sequence:
>1101_bases ATGACCCCCGACCCCAGCCCGTACGACGCCGTCCTGCTGGTGTCCTTCGGCGGACCCGAACGCCCCGAGGACGTGGTGCC GTTCCTCGAGAACGTGACCCGCGGCCGCGGCATCCCGCGCGAGCGGCTGGAGGAGGTCGGGCAGCACTACTACGAGTTCG GTGGGCGGTCCCCGATCAACGACCAGAACCGGGCGTTCCTCGCCGCGCTGCGCGACGACCTCGCCGGCGCCGGGCTGGAC CTCCCGGTCTACTGGGGCAACCGCAACTGGGACCCGCTCCTCGCCGACACGATCCGCGAGATGGCCGCCGACGGCATCAC CCGCGCCGCGTGCTTCGTCACCAGCGCGTACGCGTCGTACTCCAGCTGCCGGCAGTACCGCGAGAACCTCTACGACGCGG TCGCCGCCCTGGGGGAGGACCTCGAGGACGCGCCGGTGCTGGACAAGCTGCGGCACCCGTTCAACCACCCGGGCTTCGTC GAGCCGATGGTCGACGCCACCCTCGCCGCGCTCGCGGACCTGCCCGAGCAGGTCCGCGAGGAGGCGCACCTGGTGTTCGT GACCCACTCGCTGCCGGAGGCGATGAACGCCGCCAGCGGGCCGGAGGGCGGGGCCTACGTCGACCAGCACCTCAGCGTCG CCGACGAGATCGTCGAGCGCGTACGCCAGGAGACCGGCCACCGGCATCGGCACGCGCTGGTGTACTGCTCGCGGTCCGGT GCCCCGCACGTCCCGTGGCTCGAGCCGGACGTCAACGACCACCTCGAGCGGCTGCACCAGGACGGCGCGCCGGCGGTGGT GCTGGTCCCGATCGGCTTCGTGTCCGACCACATGGAGGTGGTCTACGACCTCGACGTCGAGGCGATGCGCACGGCGGCCC GGCTCGGCCTGCCCACCACCCGCGCGGCGACGGTGGGGATCGACCCGCGGTTCGTCGCGGCGGTGCGCGACCTGGTGCTC GAGCGGGCCGCGGTCGAGCGGGGCGAGGACGTGGTGCGCGCCAGCGTCGGCCGCTGGCCGGCCTGCTGGGACCGGTGCCC GGCGGGCTGCTGCGCGAACCCGCGCGCCGAGCGGCCGGCACTCGCGGGCGCCGACTCGTGA
Upstream 100 bases:
>100_bases CCGCGAGGATCCGGCGGTAGGACGTGAGCATCGTCTCGAGCCTAGGGCTGGGGGACCGCCGCCCACGAATCGTTATCGGC GGCTCCCTACGATGAGTCGC
Downstream 100 bases:
>100_bases CCACCCTGCCGTCGCACGCTGAGCCGTCCAACGCTGGGCCGTCCAACGCCGACCTGGCCGACCTGGCGCTCGAGGTGGCG CGGGAGGCGGCCGAGCTGGT
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase [H]
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MTPDPSPYDAVLLVSFGGPERPEDVVPFLENVTRGRGIPRERLEEVGQHYYEFGGRSPINDQNRAFLAALRDDLAGAGLD LPVYWGNRNWDPLLADTIREMAADGITRAACFVTSAYASYSSCRQYRENLYDAVAALGEDLEDAPVLDKLRHPFNHPGFV EPMVDATLAALADLPEQVREEAHLVFVTHSLPEAMNAASGPEGGAYVDQHLSVADEIVERVRQETGHRHRHALVYCSRSG APHVPWLEPDVNDHLERLHQDGAPAVVLVPIGFVSDHMEVVYDLDVEAMRTAARLGLPTTRAATVGIDPRFVAAVRDLVL ERAAVERGEDVVRASVGRWPACWDRCPAGCCANPRAERPALAGADS
Sequences:
>Translated_366_residues MTPDPSPYDAVLLVSFGGPERPEDVVPFLENVTRGRGIPRERLEEVGQHYYEFGGRSPINDQNRAFLAALRDDLAGAGLD LPVYWGNRNWDPLLADTIREMAADGITRAACFVTSAYASYSSCRQYRENLYDAVAALGEDLEDAPVLDKLRHPFNHPGFV EPMVDATLAALADLPEQVREEAHLVFVTHSLPEAMNAASGPEGGAYVDQHLSVADEIVERVRQETGHRHRHALVYCSRSG APHVPWLEPDVNDHLERLHQDGAPAVVLVPIGFVSDHMEVVYDLDVEAMRTAARLGLPTTRAATVGIDPRFVAAVRDLVL ERAAVERGEDVVRASVGRWPACWDRCPAGCCANPRAERPALAGADS >Mature_365_residues TPDPSPYDAVLLVSFGGPERPEDVVPFLENVTRGRGIPRERLEEVGQHYYEFGGRSPINDQNRAFLAALRDDLAGAGLDL PVYWGNRNWDPLLADTIREMAADGITRAACFVTSAYASYSSCRQYRENLYDAVAALGEDLEDAPVLDKLRHPFNHPGFVE PMVDATLAALADLPEQVREEAHLVFVTHSLPEAMNAASGPEGGAYVDQHLSVADEIVERVRQETGHRHRHALVYCSRSGA PHVPWLEPDVNDHLERLHQDGAPAVVLVPIGFVSDHMEVVYDLDVEAMRTAARLGLPTTRAATVGIDPRFVAAVRDLVLE RAAVERGEDVVRASVGRWPACWDRCPAGCCANPRAERPALAGADS
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=335, Percent_Identity=27.1641791044776, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI60499025, Length=335, Percent_Identity=27.1641791044776, Blast_Score=102, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6324750, Length=331, Percent_Identity=24.4712990936556, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI17864156, Length=378, Percent_Identity=25.9259259259259, Blast_Score=99, Evalue=6e-21, Organism=Drosophila melanogaster, GI45552018, Length=205, Percent_Identity=28.2926829268293, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 40109; Mature: 39978
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPDPSPYDAVLLVSFGGPERPEDVVPFLENVTRGRGIPRERLEEVGQHYYEFGGRSPIN CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC DQNRAFLAALRDDLAGAGLDLPVYWGNRNWDPLLADTIREMAADGITRAACFVTSAYASY CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH SSCRQYRENLYDAVAALGEDLEDAPVLDKLRHPFNHPGFVEPMVDATLAALADLPEQVRE HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH EAHLVFVTHSLPEAMNAASGPEGGAYVDQHLSVADEIVERVRQETGHRHRHALVYCSRSG CCEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC APHVPWLEPDVNDHLERLHQDGAPAVVLVPIGFVSDHMEVVYDLDVEAMRTAARLGLPTT CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHCCCCC RAATVGIDPRFVAAVRDLVLERAAVERGEDVVRASVGRWPACWDRCPAGCCANPRAERPA CCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCC LAGADS CCCCCC >Mature Secondary Structure TPDPSPYDAVLLVSFGGPERPEDVVPFLENVTRGRGIPRERLEEVGQHYYEFGGRSPIN CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC DQNRAFLAALRDDLAGAGLDLPVYWGNRNWDPLLADTIREMAADGITRAACFVTSAYASY CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH SSCRQYRENLYDAVAALGEDLEDAPVLDKLRHPFNHPGFVEPMVDATLAALADLPEQVRE HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH EAHLVFVTHSLPEAMNAASGPEGGAYVDQHLSVADEIVERVRQETGHRHRHALVYCSRSG CCEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC APHVPWLEPDVNDHLERLHQDGAPAVVLVPIGFVSDHMEVVYDLDVEAMRTAARLGLPTT CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHCCCCC RAATVGIDPRFVAAVRDLVLERAAVERGEDVVRASVGRWPACWDRCPAGCCANPRAERPA CCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCC LAGADS CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA