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The map label for this gene is yfbK [C]

Identifier: 119717113

GI number: 119717113

Start: 3071650

End: 3073611

Strand: Reverse

Name: yfbK [C]

Synonym: Noca_2889

Alternate gene names: 119717113

Gene position: 3073611-3071650 (Counterclockwise)

Preceding gene: 119717115

Following gene: 119717112

Centisome position: 61.65

GC content: 73.65

Gene sequence:

>1962_bases
ATGCCACTGCACTACCCGTTTTCCGCCGTCCTCGGCTGCGACGTCAGGGCCGACCTGGACGACATGGGCCTGGCACTCGT
CCTCACGACGATCTCGCCCGAGATCGGCGGCGTGCTCGTGCGCGGCGAGAAGGGCACCGCCAAGTCCACCGCCGTCCGTG
CGCTCGGCGCACTGCTCCCGCCGCTGGTCGAGCTGCCGATCGGCGCCACCGAGGACCGGGTCGTCGGCTCCATCCAGCTC
GAGTCCGCGCTCTCGGAGGGCAAGGTCGAGGTGGAGAAGGGCCTGCTCGCTCGCGCCAACGGCGGCCTGCTGTACGTCGA
CGAGGTCAACCTCCTGCACGACCACCTGGTCGATCTGCTCCTCGACGCCGCGGCGATGGGCCGCGTGAGCGTCGAGCGCG
ACGGGATCTCGGTCGAGCACGACGCACGGTTCGTGCTGATCGGCACGATGAACCCCGAGGAGGGTGAGCTTCGCCCGCAG
CTGCTCGATCGCTTCGGGCTCACCGTGGAGGTCGCCGCGCCGCGCGCGCCGGAGCCTCGTGCCGAGGTGGTCCGTCGTCG
CATGGCGTACGACGCCGATCCGGTCAGCTTCATCGAGACCTATGCTGCCGCGGAGAAGGATCTCGACCAGCGCATCCACG
GTGCTCGTGCGTCGTTGGCCGACGTGGTGCTGTCCGACGCGGCCCTGCTCAAGATCGCGGAGGTCTGCGCCGCGTTCGAG
GTGGACGGCCTGCGCGCCGACATCGTCACCGCCCGCGCCGCCGTCGCTCACGCCGCCTGGGAGGGCCGCGACGCGGTTAC
CAGGGCCGACATCCGGCGGGCCGCGACCCTCGCACTGCCGCACCGTCGCCGACGCAACCCGTTCGACGCGCCGGGCCTCG
ACGAGGACCTGCTCGACCGCATCCTCGGTGATGACGAGCTGCCGCCCGAGCCGCCCCCGGGGACCGACCACGAGGAAGGC
CCCGAAGCTGCGCCCGGGACGCCCGGGACGCCCAGGACGGATGGGGCCGCGCCTTCGCCCGGCGCGGACGCCGAGGGCGG
CAGCGACAGCGACGGCGGCGGGACCGACCCGAGCGGTCCGGATCCGGCGCTGGGCCCACCAGAACCGCAGCACCGCCCCG
AGGCTGCCGACACGGACGACCGTGCGAGCACGGTCGCAGCTGGCTCGCCGTACCGACCGAAGCTGCTGACCGTGCGCGGC
GTCGGTGCGGGCGCGAGCGGCCGCCGCAGTCGGGCCAGGACGAGCACCGGTCGCCGGGTCGGGGCCAGCAGGCCGGCCGA
CGGACGCGGATCGCTCCACCTGCTGGAGACGATCAGGGCAGCCGCACCCCGGCAGGGGTCGCGCGGTCGCACCGGCGGGC
GGCTCGCGCTGCGCCGCGACGACCTCCGGGTGGCGACGCGCGAGGGCCGCGAGTCCAACCTCATCCTGTTCTGCGTGGAC
TCCTCCGGGTCGATGGCGGCGCGCAAGCGCATGATCCAGGTCAAGACCGCGATCCTGTCGTTGCTCCTGGACGCCTACCG
TCGGCGCGACAAGGTCGGGCTCGTCACGTTCCGGGGTGACTCCGCCGACCTGGTGCTGCCGCCGACCCACTCGGTCGACG
TTGCCGCGGCACGGCTCGACGAGCTCCCTGCCGGTGGCCGCACCCCCCTCGCCGAAGGGCTGTGGGAGGCCGCGAAGGTC
CTGCGCCGGGAACGACTCCGCGACCCGCGCCTGCGGCCACTGCTGGTCGTCGTCACCGACGGTCGCGCCACGGCAGGCCG
CGACGCCGTACGCCGGTCGCTGCAGGCCGCCGAGCACGTCGCCGGCCTGGCGATCGCCTCGGTCGTCATCGACGGGGAGG
CCGGGCCACTGCGACTCGGACTCGCGATCGGGCTGGCGCGAAGCCTCAACGCGGAGCACGTCCCCGTCGCCGAGGTCAGC
GCCGAGGCGCTGACCAGAACCGTCACCAGGAAGGTCGCCTGA

Upstream 100 bases:

>100_bases
CGAGCCTCCTCCACGGAGGACTCGGCAAGTCCGAAGACCGGCCTCCCGCCTGGCTTCTCCGGCAGCGGGCCGGGGAGGAC
GAACCGAGCGGGAGCCTCAC

Downstream 100 bases:

>100_bases
TGCCCCAGGGAGTTCCCACCGCCGTTCCCGACGACGGCCTCACCACACGCCAGCGCCGCAACCGGCCGTTGCTGATCGTC
CACACCGGCGAGAACAAGGG

Product: protoporphyrin IX magnesium-chelatase

Products: ADP; phosphate; Mg-protoporphyrin IX; H+

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 652

Protein sequence:

>653_residues
MPLHYPFSAVLGCDVRADLDDMGLALVLTTISPEIGGVLVRGEKGTAKSTAVRALGALLPPLVELPIGATEDRVVGSIQL
ESALSEGKVEVEKGLLARANGGLLYVDEVNLLHDHLVDLLLDAAAMGRVSVERDGISVEHDARFVLIGTMNPEEGELRPQ
LLDRFGLTVEVAAPRAPEPRAEVVRRRMAYDADPVSFIETYAAAEKDLDQRIHGARASLADVVLSDAALLKIAEVCAAFE
VDGLRADIVTARAAVAHAAWEGRDAVTRADIRRAATLALPHRRRRNPFDAPGLDEDLLDRILGDDELPPEPPPGTDHEEG
PEAAPGTPGTPRTDGAAPSPGADAEGGSDSDGGGTDPSGPDPALGPPEPQHRPEAADTDDRASTVAAGSPYRPKLLTVRG
VGAGASGRRSRARTSTGRRVGASRPADGRGSLHLLETIRAAAPRQGSRGRTGGRLALRRDDLRVATREGRESNLILFCVD
SSGSMAARKRMIQVKTAILSLLLDAYRRRDKVGLVTFRGDSADLVLPPTHSVDVAAARLDELPAGGRTPLAEGLWEAAKV
LRRERLRDPRLRPLLVVVTDGRATAGRDAVRRSLQAAEHVAGLAIASVVIDGEAGPLRLGLAIGLARSLNAEHVPVAEVS
AEALTRTVTRKVA

Sequences:

>Translated_653_residues
MPLHYPFSAVLGCDVRADLDDMGLALVLTTISPEIGGVLVRGEKGTAKSTAVRALGALLPPLVELPIGATEDRVVGSIQL
ESALSEGKVEVEKGLLARANGGLLYVDEVNLLHDHLVDLLLDAAAMGRVSVERDGISVEHDARFVLIGTMNPEEGELRPQ
LLDRFGLTVEVAAPRAPEPRAEVVRRRMAYDADPVSFIETYAAAEKDLDQRIHGARASLADVVLSDAALLKIAEVCAAFE
VDGLRADIVTARAAVAHAAWEGRDAVTRADIRRAATLALPHRRRRNPFDAPGLDEDLLDRILGDDELPPEPPPGTDHEEG
PEAAPGTPGTPRTDGAAPSPGADAEGGSDSDGGGTDPSGPDPALGPPEPQHRPEAADTDDRASTVAAGSPYRPKLLTVRG
VGAGASGRRSRARTSTGRRVGASRPADGRGSLHLLETIRAAAPRQGSRGRTGGRLALRRDDLRVATREGRESNLILFCVD
SSGSMAARKRMIQVKTAILSLLLDAYRRRDKVGLVTFRGDSADLVLPPTHSVDVAAARLDELPAGGRTPLAEGLWEAAKV
LRRERLRDPRLRPLLVVVTDGRATAGRDAVRRSLQAAEHVAGLAIASVVIDGEAGPLRLGLAIGLARSLNAEHVPVAEVS
AEALTRTVTRKVA
>Mature_652_residues
PLHYPFSAVLGCDVRADLDDMGLALVLTTISPEIGGVLVRGEKGTAKSTAVRALGALLPPLVELPIGATEDRVVGSIQLE
SALSEGKVEVEKGLLARANGGLLYVDEVNLLHDHLVDLLLDAAAMGRVSVERDGISVEHDARFVLIGTMNPEEGELRPQL
LDRFGLTVEVAAPRAPEPRAEVVRRRMAYDADPVSFIETYAAAEKDLDQRIHGARASLADVVLSDAALLKIAEVCAAFEV
DGLRADIVTARAAVAHAAWEGRDAVTRADIRRAATLALPHRRRRNPFDAPGLDEDLLDRILGDDELPPEPPPGTDHEEGP
EAAPGTPGTPRTDGAAPSPGADAEGGSDSDGGGTDPSGPDPALGPPEPQHRPEAADTDDRASTVAAGSPYRPKLLTVRGV
GAGASGRRSRARTSTGRRVGASRPADGRGSLHLLETIRAAAPRQGSRGRTGGRLALRRDDLRVATREGRESNLILFCVDS
SGSMAARKRMIQVKTAILSLLLDAYRRRDKVGLVTFRGDSADLVLPPTHSVDVAAARLDELPAGGRTPLAEGLWEAAKVL
RRERLRDPRLRPLLVVVTDGRATAGRDAVRRSLQAAEHVAGLAIASVVIDGEAGPLRLGLAIGLARSLNAEHVPVAEVSA
EALTRTVTRKVA

Specific function: Unknown

COG id: COG1239

COG function: function code H; Mg-chelatase subunit ChlI

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 VWFA domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011704
- InterPro:   IPR012804
- InterPro:   IPR002035 [H]

Pfam domain/function: PF07728 AAA_5; PF00092 VWA [H]

EC number: 6.6.1.1

Molecular weight: Translated: 68946; Mature: 68815

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLHYPFSAVLGCDVRADLDDMGLALVLTTISPEIGGVLVRGEKGTAKSTAVRALGALLP
CCCCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHH
PLVELPIGATEDRVVGSIQLESALSEGKVEVEKGLLARANGGLLYVDEVNLLHDHLVDLL
HHHHCCCCCCCCCEEEEEEHHHHHHCCCEEHHHCEEEECCCCEEEEECHHHHHHHHHHHH
LDAAAMGRVSVERDGISVEHDARFVLIGTMNPEEGELRPQLLDRFGLTVEVAAPRAPEPR
HHHHHHCCEEEECCCCCEECCCEEEEEECCCCCCCCCCHHHHHHHCCEEEEECCCCCCCH
AEVVRRRMAYDADPVSFIETYAAAEKDLDQRIHGARASLADVVLSDAALLKIAEVCAAFE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VDGLRADIVTARAAVAHAAWEGRDAVTRADIRRAATLALPHRRRRNPFDAPGLDEDLLDR
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHH
ILGDDELPPEPPPGTDHEEGPEAAPGTPGTPRTDGAAPSPGADAEGGSDSDGGGTDPSGP
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DPALGPPEPQHRPEAADTDDRASTVAAGSPYRPKLLTVRGVGAGASGRRSRARTSTGRRV
CCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCC
GASRPADGRGSLHLLETIRAAAPRQGSRGRTGGRLALRRDDLRVATREGRESNLILFCVD
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCEEEEEEC
SSGSMAARKRMIQVKTAILSLLLDAYRRRDKVGLVTFRGDSADLVLPPTHSVDVAAARLD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCCCCHHHHHHHH
ELPAGGRTPLAEGLWEAAKVLRRERLRDPRLRPLLVVVTDGRATAGRDAVRRSLQAAEHV
HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
AGLAIASVVIDGEAGPLRLGLAIGLARSLNAEHVPVAEVSAEALTRTVTRKVA
HHHEEEEEEECCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PLHYPFSAVLGCDVRADLDDMGLALVLTTISPEIGGVLVRGEKGTAKSTAVRALGALLP
CCCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHH
PLVELPIGATEDRVVGSIQLESALSEGKVEVEKGLLARANGGLLYVDEVNLLHDHLVDLL
HHHHCCCCCCCCCEEEEEEHHHHHHCCCEEHHHCEEEECCCCEEEEECHHHHHHHHHHHH
LDAAAMGRVSVERDGISVEHDARFVLIGTMNPEEGELRPQLLDRFGLTVEVAAPRAPEPR
HHHHHHCCEEEECCCCCEECCCEEEEEECCCCCCCCCCHHHHHHHCCEEEEECCCCCCCH
AEVVRRRMAYDADPVSFIETYAAAEKDLDQRIHGARASLADVVLSDAALLKIAEVCAAFE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VDGLRADIVTARAAVAHAAWEGRDAVTRADIRRAATLALPHRRRRNPFDAPGLDEDLLDR
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHH
ILGDDELPPEPPPGTDHEEGPEAAPGTPGTPRTDGAAPSPGADAEGGSDSDGGGTDPSGP
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DPALGPPEPQHRPEAADTDDRASTVAAGSPYRPKLLTVRGVGAGASGRRSRARTSTGRRV
CCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCC
GASRPADGRGSLHLLETIRAAAPRQGSRGRTGGRLALRRDDLRVATREGRESNLILFCVD
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCEEEEEEC
SSGSMAARKRMIQVKTAILSLLLDAYRRRDKVGLVTFRGDSADLVLPPTHSVDVAAARLD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCCCCHHHHHHHH
ELPAGGRTPLAEGLWEAAKVLRRERLRDPRLRPLLVVVTDGRATAGRDAVRRSLQAAEHV
HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
AGLAIASVVIDGEAGPLRLGLAIGLARSLNAEHVPVAEVSAEALTRTVTRKVA
HHHEEEEEEECCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; protoporphyrin IX; Mg2+; H2O

Specific reaction: ATP + protoporphyrin IX + Mg2+ + H2O = ADP + phosphate + Mg-protoporphyrin IX + 2 H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]