Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is 119717098
Identifier: 119717098
GI number: 119717098
Start: 3051410
End: 3052723
Strand: Reverse
Name: 119717098
Synonym: Noca_2874
Alternate gene names: NA
Gene position: 3052723-3051410 (Counterclockwise)
Preceding gene: 119717100
Following gene: 119717097
Centisome position: 61.23
GC content: 75.27
Gene sequence:
>1314_bases ATGACACTGCACGACCGGCTCGCCGAGCTCGCCGGGGACGCCCCGCCCGGCGGACCCGTCCCCGACCTGTGGGAACGCGG CCGCAGCTATCACCGTCGGCAGCGGGTCGGGACGCTCGCGATCGCGGCGATGGCGGTCGTGCTGCTGGCGACGATCGCCG GCCTCGACTGGCAGCGCTCGGCCCCTCAGCCGGCGCCGGCGGGTGGTCAGGTGGGGCTGCCGGACCAGGTCTGGACGCCG GGCGCGTGGCTGCCGTCGACCGACCGGCCCGGCCGCCTCGCGGCCGTGACCGGCGCCCAACAGGGCACCTGGACCGGCGA GCGCTCGGCCGTCGTCGGCGTCTCGGCAGCCACCGGCGGGTACGCGTTCCTCGACCTGCCCGACGTCGACCTCGAGCACG GCGGGGTCGCGCTCGCACCCGACGGCTCGCATCTGGCGTACTGGCTGACCGGCCGCACGAGGGACACGCCGAACAGCGCA TCGGGTCCGATCACGGGCGTCGCAGTGTTCGACGCCGAGACGGGCGGGACCACGCGGCACTGGATCCCGACCGACCATGG GCTCCAGCCGGACTTCCTCGCATGGGCCGACAGCGACACGGTGGTCTTCTCGGCCGGCCAGATCCGCGGCGGCGACGACG ACTCCGACATGGACCGGGCGAGCTCGTCGTTCGGCACGGTCACCAGCTGGCCGCTGGGCGGTGAGCCGCAACCGGTTCCC GGCGTCGGCGCCGGCGAGTCGCTGCTGGGCGCCGGCCACGGCCGGATCCTCCTCGACGACCGTTCCTCCGAGGGCGGTCG TGGGTACCCGTTGCTCGACCTCGCCGACCCGGGGAAGGTCCGCTACTTGGACTTCCGCCGAAGCTCGATCACGGTCGGCA GCCTGCACTCCGCCGCGGTGGACGCCTCCGGGCGCCGGGTCGCCTCGGTCCCGGGCAACCGGAACCCGAGCACGGTGCAC GCGGGGCCCTCCGGACGGACGACACCGGTCCCGGGCACCGGGTCGACCTTCGGCGTCGTCGACTGGCTCGACGCCCGGAC GATCGTCACGCTCCGGCGGACCGACCGCTCGCGGTCCGCGGGGAGCGGGCTGTACCGCGTCGCGCTCGGCACCGGGGAGT CGGAGCAGCTCGTGCGCCTCCCTGCCGATGGCGGGGCCTGGCAGTTCGCCACCGACCTCCTGGGCGCACCGTCGGTCGAC GCGACGGAGCCCCCGTCGCCCATCGATCCACGGGTGACGGCGGGTCTGGCGACCGGCGTGTTCCTCGGCGCGGGCGCGAC GCTCGTCCTCTGGAGGCGCCGTGTCCGTCCGTGA
Upstream 100 bases:
>100_bases CATTCAGCAGGAGAGCCCGACTCGGGCATTTCCTGGCCTGACCCCTCTCTTTCGGGATCTCGTCGCGTGGGTAGGGGTGA GACCCGCTCCAGGAGGACCG
Downstream 100 bases:
>100_bases CGCGGAGCGGGAGTCCTTCGAGCAGTACGTCGCCGCCCGCCGGGGCGCGCTGCTGCGCACGGCATACCTGCTCACCGGGA ACCGGGAGGACGCCGAGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MTLHDRLAELAGDAPPGGPVPDLWERGRSYHRRQRVGTLAIAAMAVVLLATIAGLDWQRSAPQPAPAGGQVGLPDQVWTP GAWLPSTDRPGRLAAVTGAQQGTWTGERSAVVGVSAATGGYAFLDLPDVDLEHGGVALAPDGSHLAYWLTGRTRDTPNSA SGPITGVAVFDAETGGTTRHWIPTDHGLQPDFLAWADSDTVVFSAGQIRGGDDDSDMDRASSSFGTVTSWPLGGEPQPVP GVGAGESLLGAGHGRILLDDRSSEGGRGYPLLDLADPGKVRYLDFRRSSITVGSLHSAAVDASGRRVASVPGNRNPSTVH AGPSGRTTPVPGTGSTFGVVDWLDARTIVTLRRTDRSRSAGSGLYRVALGTGESEQLVRLPADGGAWQFATDLLGAPSVD ATEPPSPIDPRVTAGLATGVFLGAGATLVLWRRRVRP
Sequences:
>Translated_437_residues MTLHDRLAELAGDAPPGGPVPDLWERGRSYHRRQRVGTLAIAAMAVVLLATIAGLDWQRSAPQPAPAGGQVGLPDQVWTP GAWLPSTDRPGRLAAVTGAQQGTWTGERSAVVGVSAATGGYAFLDLPDVDLEHGGVALAPDGSHLAYWLTGRTRDTPNSA SGPITGVAVFDAETGGTTRHWIPTDHGLQPDFLAWADSDTVVFSAGQIRGGDDDSDMDRASSSFGTVTSWPLGGEPQPVP GVGAGESLLGAGHGRILLDDRSSEGGRGYPLLDLADPGKVRYLDFRRSSITVGSLHSAAVDASGRRVASVPGNRNPSTVH AGPSGRTTPVPGTGSTFGVVDWLDARTIVTLRRTDRSRSAGSGLYRVALGTGESEQLVRLPADGGAWQFATDLLGAPSVD ATEPPSPIDPRVTAGLATGVFLGAGATLVLWRRRVRP >Mature_436_residues TLHDRLAELAGDAPPGGPVPDLWERGRSYHRRQRVGTLAIAAMAVVLLATIAGLDWQRSAPQPAPAGGQVGLPDQVWTPG AWLPSTDRPGRLAAVTGAQQGTWTGERSAVVGVSAATGGYAFLDLPDVDLEHGGVALAPDGSHLAYWLTGRTRDTPNSAS GPITGVAVFDAETGGTTRHWIPTDHGLQPDFLAWADSDTVVFSAGQIRGGDDDSDMDRASSSFGTVTSWPLGGEPQPVPG VGAGESLLGAGHGRILLDDRSSEGGRGYPLLDLADPGKVRYLDFRRSSITVGSLHSAAVDASGRRVASVPGNRNPSTVHA GPSGRTTPVPGTGSTFGVVDWLDARTIVTLRRTDRSRSAGSGLYRVALGTGESEQLVRLPADGGAWQFATDLLGAPSVDA TEPPSPIDPRVTAGLATGVFLGAGATLVLWRRRVRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45377; Mature: 45246
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLHDRLAELAGDAPPGGPVPDLWERGRSYHRRQRVGTLAIAAMAVVLLATIAGLDWQRS CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC APQPAPAGGQVGLPDQVWTPGAWLPSTDRPGRLAAVTGAQQGTWTGERSAVVGVSAATGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCC YAFLDLPDVDLEHGGVALAPDGSHLAYWLTGRTRDTPNSASGPITGVAVFDAETGGTTRH EEEEECCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEEE WIPTDHGLQPDFLAWADSDTVVFSAGQIRGGDDDSDMDRASSSFGTVTSWPLGGEPQPVP ECCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCC GVGAGESLLGAGHGRILLDDRSSEGGRGYPLLDLADPGKVRYLDFRRSSITVGSLHSAAV CCCCCCHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEECCHHHHC DASGRRVASVPGNRNPSTVHAGPSGRTTPVPGTGSTFGVVDWLDARTIVTLRRTDRSRSA CCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCC GSGLYRVALGTGESEQLVRLPADGGAWQFATDLLGAPSVDATEPPSPIDPRVTAGLATGV CCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH FLGAGATLVLWRRRVRP HHCCCHHEEHHHHHCCC >Mature Secondary Structure TLHDRLAELAGDAPPGGPVPDLWERGRSYHRRQRVGTLAIAAMAVVLLATIAGLDWQRS CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC APQPAPAGGQVGLPDQVWTPGAWLPSTDRPGRLAAVTGAQQGTWTGERSAVVGVSAATGG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCC YAFLDLPDVDLEHGGVALAPDGSHLAYWLTGRTRDTPNSASGPITGVAVFDAETGGTTRH EEEEECCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEEE WIPTDHGLQPDFLAWADSDTVVFSAGQIRGGDDDSDMDRASSSFGTVTSWPLGGEPQPVP ECCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCC GVGAGESLLGAGHGRILLDDRSSEGGRGYPLLDLADPGKVRYLDFRRSSITVGSLHSAAV CCCCCCHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEECCHHHHC DASGRRVASVPGNRNPSTVHAGPSGRTTPVPGTGSTFGVVDWLDARTIVTLRRTDRSRSA CCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCC GSGLYRVALGTGESEQLVRLPADGGAWQFATDLLGAPSVDATEPPSPIDPRVTAGLATGV CCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH FLGAGATLVLWRRRVRP HHCCCHHEEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA