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The map label for this gene is gcvH [H]

Identifier: 119716939

GI number: 119716939

Start: 2887635

End: 2888021

Strand: Reverse

Name: gcvH [H]

Synonym: Noca_2714

Alternate gene names: 119716939

Gene position: 2888021-2887635 (Counterclockwise)

Preceding gene: 119716940

Following gene: 119716938

Centisome position: 57.92

GC content: 70.8

Gene sequence:

>387_bases
TTGTACCCCGACGACTTGAAGTACACGACCGAGCACGAGTGGGTCCGCGAGCCCGGGGAGCACGAGGGCTCGGTCCGGAT
CGGGATCACCCACTACGCGCAGGACGCCCTGGGCGACATCGTCTACGTCTCCCTCCCGGAGCTCGGGTCGACCGTCGAGG
CCGGCAGCACCTGCGGTGAGCTGGAGTCCACCAAGTCGGTGAGCGACGTCTACGCGCCGGTCTCCGGCGAGGTGGTGGCC
CGCAACGACGCGCTGGACGCGACGCCGGAGCTGGTGAACAACGACCCGTACGGCGGCGGCTGGCTCTTCGAGGTGGTCCC
GAGCGACCGCGCCGGGCTGGACGGGCTGCTGGACGCCACGGCGTACCAGGCCTCGCTCGACGCCTGA

Upstream 100 bases:

>100_bases
CGCCAGACCGGAGTACGCCGAACCCGACGGGGCGCAGTAGCCTCACCGCAAGGGCGCCCGGGGCGCCCGATCCCGGCACC
GATCCACCCGAGGAGACGCC

Downstream 100 bases:

>100_bases
CCGGTCCCGATCGGGCTTGATCGGGCAGGCCGGGCTGATAGGTTCGGTCCCAACCGTCAACCTCAACCCGGCCTTGAGGG
TTTGCCCCCGACCGAAGGAC

Product: glycine cleavage system H protein

Products: Proton; NADH; NH3; CO2; 5,10-methylene-THF [C]

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MYPDDLKYTTEHEWVREPGEHEGSVRIGITHYAQDALGDIVYVSLPELGSTVEAGSTCGELESTKSVSDVYAPVSGEVVA
RNDALDATPELVNNDPYGGGWLFEVVPSDRAGLDGLLDATAYQASLDA

Sequences:

>Translated_128_residues
MYPDDLKYTTEHEWVREPGEHEGSVRIGITHYAQDALGDIVYVSLPELGSTVEAGSTCGELESTKSVSDVYAPVSGEVVA
RNDALDATPELVNNDPYGGGWLFEVVPSDRAGLDGLLDATAYQASLDA
>Mature_128_residues
MYPDDLKYTTEHEWVREPGEHEGSVRIGITHYAQDALGDIVYVSLPELGSTVEAGSTCGELESTKSVSDVYAPVSGEVVA
RNDALDATPELVNNDPYGGGWLFEVVPSDRAGLDGLLDATAYQASLDA

Specific function: The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [H]

COG id: COG0509

COG function: function code E; Glycine cleavage system H protein (lipoate-binding)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 lipoyl-binding domain [H]

Homologues:

Organism=Homo sapiens, GI49574537, Length=122, Percent_Identity=41.8032786885246, Blast_Score=100, Evalue=5e-22,
Organism=Homo sapiens, GI89057342, Length=122, Percent_Identity=40.9836065573771, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1789271, Length=125, Percent_Identity=56.8, Blast_Score=150, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17551294, Length=115, Percent_Identity=39.1304347826087, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17507493, Length=115, Percent_Identity=37.3913043478261, Blast_Score=90, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6319272, Length=127, Percent_Identity=37.007874015748, Blast_Score=95, Evalue=4e-21,
Organism=Drosophila melanogaster, GI17865652, Length=128, Percent_Identity=40.625, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003016
- InterPro:   IPR002930
- InterPro:   IPR017453
- InterPro:   IPR011053 [H]

Pfam domain/function: PF01597 GCV_H [H]

EC number: NA

Molecular weight: Translated: 13676; Mature: 13676

Theoretical pI: Translated: 3.80; Mature: 3.80

Prosite motif: PS00189 LIPOYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPDDLKYTTEHEWVREPGEHEGSVRIGITHYAQDALGDIVYVSLPELGSTVEAGSTCGE
CCCCCCCCCCCCHHHCCCCCCCCEEEEEEHHHHHHHHCCEEEEECCCCCCCCCCCCCCCC
LESTKSVSDVYAPVSGEVVARNDALDATPELVNNDPYGGGWLFEVVPSDRAGLDGLLDAT
CCCCCCHHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCHHHHHH
AYQASLDA
HHHEECCC
>Mature Secondary Structure
MYPDDLKYTTEHEWVREPGEHEGSVRIGITHYAQDALGDIVYVSLPELGSTVEAGSTCGE
CCCCCCCCCCCCHHHCCCCCCCCEEEEEEHHHHHHHHCCEEEEECCCCCCCCCCCCCCCC
LESTKSVSDVYAPVSGEVVARNDALDATPELVNNDPYGGGWLFEVVPSDRAGLDGLLDAT
CCCCCCHHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCHHHHHH
AYQASLDA
HHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Lipoyl Cofactor. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NAD; L-glycine; THF [C]

Specific reaction: NAD + L-glycine + THF = Proton + NADH + NH3 + CO2 + 5,10-methylene-THF [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA