| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716924
Identifier: 119716924
GI number: 119716924
Start: 2868856
End: 2870211
Strand: Reverse
Name: 119716924
Synonym: Noca_2699
Alternate gene names: NA
Gene position: 2870211-2868856 (Counterclockwise)
Preceding gene: 119716925
Following gene: 119716921
Centisome position: 57.57
GC content: 70.06
Gene sequence:
>1356_bases GTGGACGCCGACTACCTCGTGGTGGGGGCGGGCGCCATGGGCATGGCCTTCACGGACGCGTTGATCGACCACGCCGAGGT ACGCGTCGCACTGATCGATCGTCGACACGGCGTGAGTGGGCACTGGCTCGAGGCATATCCCTTCGTCCGGCTGCACCAAG CCTCGGCGTTCTACGGCGCCGCGTCGACCCTGCTTGGCGGCGGCCAGGTGCAGCAGCGCGGACCGGAGCAGGGCTTGCAG GAGCGGGCAACCCAGGCCGAGATCTGCACGTACTACGCCAGGTTGCTCGACCGGATGGTCGAGTCGGGCAAGGTCGAGTT CTTCCCCAACAGCGAGTACGTCGGCGGGAGAACGGTCGTCTCCCGTGTCTCGGGCGAACGGTTCGAGGTGCCCGAGCGTT GCCGGATCGTCGACGCCCACTACTTGGCGCCGAGCATCCCGGCGGAGAAGCCGGCGCCCTTCGTGGTGGGAGACGCAGCC CGCGTCGTGCCGGTCAACGACCTCGCCCGACTCGGCGAAGCCCCGAGCCAGTACGTCGTCGTCGGCTCGGGGAAGACCGC GACCGACGCGTGCATCTGGCTGCTCTCCCGTGGGGTCGACCCGGACGCGATCTGCTGGGTGCGACCGCGTGAGCCGTGGA TGATGAACCGGGCTGTCGTCCAACCGGATCCTGCGATCTTCACCCGCTTGGCCGCGGACACGATGCAGGCAGGGGCGGAG TCCACCTCGCTCGAGGACCTGTTCCTCCGTCTCGAGGACGCCGGCATCATGCTCCGCATCGACCGCACCGTGATGCCGAC GATGGCCAAGGCCCCCACGCTGGCCGTGTGGGAGCTCGAGCAGCTGCGCACCCTCGAGAACGTGCTCCGACGGGGACACC TCGAGGCCGCCGACCCGGGCAAGCTCGTCTTCGCCGACGGTTCGGTCGCCGTCGCGGACGACGCCCTGGTCGTCCACTGT GCGGCGGACGGCCTGAAGTACCCGCCACTCGTCCCGGTCTGGCGCCCGGAAGGCATCACGCTCCAGGCGGTCCGGGCCGG CTTCCCGTGCTTCGGCGCGGCCCTCGTCGGGTACGTCGAGGCGACGCGTCGCGACGACGAGGACAAGAACCGCCTCTGCC CGCCGACCGGCTTCGGCAACTCGATGGCCTCCTGGGCGCGGATGAATGTCCACGGCACGCGGGCGGTGCTGTCGTTCATG GCCGAGCCCGACGTCAAGGAGTGGGCGAACAAGGCGGCGATCAACCCGGCGCGGACGCCGCCCGAGTATCCGGGCTCTGC GGCGTTCGACGACGCCCGAGAGAAGCTCGCGGCCCATCTTCGTCCGGGGTTGGCCCGGCTCGCCGAGCTGTCCTGA
Upstream 100 bases:
>100_bases GACCTGACCTGCTCGCGGGTATCCGCGCGCGAGCAGACGACACGAACGAGTCATGGACGCGATCTGACGGCCGTGCCACC GTGGTGTCGTGACCCGGACC
Downstream 100 bases:
>100_bases CCGGTGCCCACCTCGCCGTCGTGGTGAGCTACACGTAGCGCACGCAGCGCTCGGGGGAGACGAACCCGTAGAGCACCAGC CCGGACTCCTCGGCGAGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MDADYLVVGAGAMGMAFTDALIDHAEVRVALIDRRHGVSGHWLEAYPFVRLHQASAFYGAASTLLGGGQVQQRGPEQGLQ ERATQAEICTYYARLLDRMVESGKVEFFPNSEYVGGRTVVSRVSGERFEVPERCRIVDAHYLAPSIPAEKPAPFVVGDAA RVVPVNDLARLGEAPSQYVVVGSGKTATDACIWLLSRGVDPDAICWVRPREPWMMNRAVVQPDPAIFTRLAADTMQAGAE STSLEDLFLRLEDAGIMLRIDRTVMPTMAKAPTLAVWELEQLRTLENVLRRGHLEAADPGKLVFADGSVAVADDALVVHC AADGLKYPPLVPVWRPEGITLQAVRAGFPCFGAALVGYVEATRRDDEDKNRLCPPTGFGNSMASWARMNVHGTRAVLSFM AEPDVKEWANKAAINPARTPPEYPGSAAFDDAREKLAAHLRPGLARLAELS
Sequences:
>Translated_451_residues MDADYLVVGAGAMGMAFTDALIDHAEVRVALIDRRHGVSGHWLEAYPFVRLHQASAFYGAASTLLGGGQVQQRGPEQGLQ ERATQAEICTYYARLLDRMVESGKVEFFPNSEYVGGRTVVSRVSGERFEVPERCRIVDAHYLAPSIPAEKPAPFVVGDAA RVVPVNDLARLGEAPSQYVVVGSGKTATDACIWLLSRGVDPDAICWVRPREPWMMNRAVVQPDPAIFTRLAADTMQAGAE STSLEDLFLRLEDAGIMLRIDRTVMPTMAKAPTLAVWELEQLRTLENVLRRGHLEAADPGKLVFADGSVAVADDALVVHC AADGLKYPPLVPVWRPEGITLQAVRAGFPCFGAALVGYVEATRRDDEDKNRLCPPTGFGNSMASWARMNVHGTRAVLSFM AEPDVKEWANKAAINPARTPPEYPGSAAFDDAREKLAAHLRPGLARLAELS >Mature_451_residues MDADYLVVGAGAMGMAFTDALIDHAEVRVALIDRRHGVSGHWLEAYPFVRLHQASAFYGAASTLLGGGQVQQRGPEQGLQ ERATQAEICTYYARLLDRMVESGKVEFFPNSEYVGGRTVVSRVSGERFEVPERCRIVDAHYLAPSIPAEKPAPFVVGDAA RVVPVNDLARLGEAPSQYVVVGSGKTATDACIWLLSRGVDPDAICWVRPREPWMMNRAVVQPDPAIFTRLAADTMQAGAE STSLEDLFLRLEDAGIMLRIDRTVMPTMAKAPTLAVWELEQLRTLENVLRRGHLEAADPGKLVFADGSVAVADDALVVHC AADGLKYPPLVPVWRPEGITLQAVRAGFPCFGAALVGYVEATRRDDEDKNRLCPPTGFGNSMASWARMNVHGTRAVLSFM AEPDVKEWANKAAINPARTPPEYPGSAAFDDAREKLAAHLRPGLARLAELS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49043; Mature: 49043
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDADYLVVGAGAMGMAFTDALIDHAEVRVALIDRRHGVSGHWLEAYPFVRLHQASAFYGA CCCCEEEEECCCHHHHHHHHHHHHHHEEEEEEECCCCCCCCEEECCCEEEEECCHHHHHH ASTLLGGGQVQQRGPEQGLQERATQAEICTYYARLLDRMVESGKVEFFPNSEYVGGRTVV HHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHH SRVSGERFEVPERCRIVDAHYLAPSIPAEKPAPFVVGDAARVVPVNDLARLGEAPSQYVV HHHCCCCCCCCHHHEEEEHHHCCCCCCCCCCCCEEECCCEEEEEHHHHHHHCCCCCCEEE VGSGKTATDACIWLLSRGVDPDAICWVRPREPWMMNRAVVQPDPAIFTRLAADTMQAGAE EECCCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCEEECCCHHHHHHHHHHHHHCCCC STSLEDLFLRLEDAGIMLRIDRTVMPTMAKAPTLAVWELEQLRTLENVLRRGHLEAADPG CCCHHHHHHEEECCCEEEEECCHHCCHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCC KLVFADGSVAVADDALVVHCAADGLKYPPLVPVWRPEGITLQAVRAGFPCFGAALVGYVE CEEEECCCEEEECCEEEEEEECCCCCCCCCCEEECCCCCEEEHHHCCCCHHHHHHHHHHH ATRRDDEDKNRLCPPTGFGNSMASWARMNVHGTRAVLSFMAEPDVKEWANKAAINPARTP HHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCC PEYPGSAAFDDAREKLAAHLRPGLARLAELS CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDADYLVVGAGAMGMAFTDALIDHAEVRVALIDRRHGVSGHWLEAYPFVRLHQASAFYGA CCCCEEEEECCCHHHHHHHHHHHHHHEEEEEEECCCCCCCCEEECCCEEEEECCHHHHHH ASTLLGGGQVQQRGPEQGLQERATQAEICTYYARLLDRMVESGKVEFFPNSEYVGGRTVV HHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHH SRVSGERFEVPERCRIVDAHYLAPSIPAEKPAPFVVGDAARVVPVNDLARLGEAPSQYVV HHHCCCCCCCCHHHEEEEHHHCCCCCCCCCCCCEEECCCEEEEEHHHHHHHCCCCCCEEE VGSGKTATDACIWLLSRGVDPDAICWVRPREPWMMNRAVVQPDPAIFTRLAADTMQAGAE EECCCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCEEECCCHHHHHHHHHHHHHCCCC STSLEDLFLRLEDAGIMLRIDRTVMPTMAKAPTLAVWELEQLRTLENVLRRGHLEAADPG CCCHHHHHHEEECCCEEEEECCHHCCHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCC KLVFADGSVAVADDALVVHCAADGLKYPPLVPVWRPEGITLQAVRAGFPCFGAALVGYVE CEEEECCCEEEECCEEEEEEECCCCCCCCCCEEECCCCCEEEHHHCCCCHHHHHHHHHHH ATRRDDEDKNRLCPPTGFGNSMASWARMNVHGTRAVLSFMAEPDVKEWANKAAINPARTP HHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCC PEYPGSAAFDDAREKLAAHLRPGLARLAELS CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]