Definition | Nocardioides sp. JS614 chromosome, complete genome. |
---|---|
Accession | NC_008699 |
Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119716749
Identifier: 119716749
GI number: 119716749
Start: 2689530
End: 2690258
Strand: Reverse
Name: 119716749
Synonym: Noca_2523
Alternate gene names: NA
Gene position: 2690258-2689530 (Counterclockwise)
Preceding gene: 119716761
Following gene: 119716748
Centisome position: 53.96
GC content: 75.31
Gene sequence:
>729_bases ATGCCCGACACCCAGCCCAGCCCGGCAGCCGTCTCCTTCGCCGAGGTGCTGCTTCCCGAGGCGACCCGCGCCCTGATCCG CACGGCCGACGCGCTCGAGGACCCCGAGTACGCCGCGCCCAGCCGACTGCCCGGCTGGACCCGCGCCCACGTGCTGGCCC ACCTGGCGCTCAACGCCGAGGGCCTCACCGGCGCGCTCGCCGGCATCGTCGAGGGCCGCCGGGTCCCGATGTACGCCTCG CAGGAGGCGCGGAACACCGACATCGAGGAGCTCGCCGGCAAGACGCCGACGGCGATCCGGACCCGACTGCTCGGCGCCTG CACCGACCTGACCGACGCCATCGCCGCCGTCCCGGACGACGCCTGGGACACCACGATCGACCGGGTCCCGGACGGGCCCG CCTTCCCCGCGCTCGCCGTGCCCGGCATGCGGTTGCGCGAGGTGGAGATCCACCACGCGGACCTGGCAGCGGGCTACGAC CGGTCGCAGTGGTCCCCGGAGCTGACCGCACACGTCCTCGACACCGCCGTGACCCGCGGCGCGACCGGGACCGCATTCAC GGCCCACGCCACCGACCTGGACCGCTCCTGGAGCTACGGAGACCCGGCCGGCGGCGGACCGACGGTATCGGGCACCGCGG CCGACCTCGCGTGGTGGCTCACCGGTCGAGGAGCCGGCGAGGGGCTGACCAGCGACGGCGGCGAGCTCCCGCGGATCGAG GAGTGGTGA
Upstream 100 bases:
>100_bases CATCGTAGCCGCTGCCGGCCAGGCATAACGAACCCCGGCGCGCGGCTGTTCCCACAATCTCACGCGCCACCGACAGCCGG TCCTCGGGCAGGATGGGCCC
Downstream 100 bases:
>100_bases TGACCGAGGCGCACGACTACACCGGGGCGGTGCGGCCCGGCGGGCCGCCTGACGTACGCACGCTGGCGCACCTGTCGATC ACCAAGGTCGCCGTCGACGA
Product: hypothetical protein
Products: NA
Alternate protein names: OmpA/MotB
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MPDTQPSPAAVSFAEVLLPEATRALIRTADALEDPEYAAPSRLPGWTRAHVLAHLALNAEGLTGALAGIVEGRRVPMYAS QEARNTDIEELAGKTPTAIRTRLLGACTDLTDAIAAVPDDAWDTTIDRVPDGPAFPALAVPGMRLREVEIHHADLAAGYD RSQWSPELTAHVLDTAVTRGATGTAFTAHATDLDRSWSYGDPAGGGPTVSGTAADLAWWLTGRGAGEGLTSDGGELPRIE EW
Sequences:
>Translated_242_residues MPDTQPSPAAVSFAEVLLPEATRALIRTADALEDPEYAAPSRLPGWTRAHVLAHLALNAEGLTGALAGIVEGRRVPMYAS QEARNTDIEELAGKTPTAIRTRLLGACTDLTDAIAAVPDDAWDTTIDRVPDGPAFPALAVPGMRLREVEIHHADLAAGYD RSQWSPELTAHVLDTAVTRGATGTAFTAHATDLDRSWSYGDPAGGGPTVSGTAADLAWWLTGRGAGEGLTSDGGELPRIE EW >Mature_241_residues PDTQPSPAAVSFAEVLLPEATRALIRTADALEDPEYAAPSRLPGWTRAHVLAHLALNAEGLTGALAGIVEGRRVPMYASQ EARNTDIEELAGKTPTAIRTRLLGACTDLTDAIAAVPDDAWDTTIDRVPDGPAFPALAVPGMRLREVEIHHADLAAGYDR SQWSPELTAHVLDTAVTRGATGTAFTAHATDLDRSWSYGDPAGGGPTVSGTAADLAWWLTGRGAGEGLTSDGGELPRIEE W
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25466; Mature: 25335
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDTQPSPAAVSFAEVLLPEATRALIRTADALEDPEYAAPSRLPGWTRAHVLAHLALNAE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC GLTGALAGIVEGRRVPMYASQEARNTDIEELAGKTPTAIRTRLLGACTDLTDAIAAVPDD CHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC AWDTTIDRVPDGPAFPALAVPGMRLREVEIHHADLAAGYDRSQWSPELTAHVLDTAVTRG HHHHHHHCCCCCCCCCHHCCCCCEEEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHCC ATGTAFTAHATDLDRSWSYGDPAGGGPTVSGTAADLAWWLTGRGAGEGLTSDGGELPRIE CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCC EW CC >Mature Secondary Structure PDTQPSPAAVSFAEVLLPEATRALIRTADALEDPEYAAPSRLPGWTRAHVLAHLALNAE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC GLTGALAGIVEGRRVPMYASQEARNTDIEELAGKTPTAIRTRLLGACTDLTDAIAAVPDD CHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC AWDTTIDRVPDGPAFPALAVPGMRLREVEIHHADLAAGYDRSQWSPELTAHVLDTAVTRG HHHHHHHCCCCCCCCCHHCCCCCEEEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHCC ATGTAFTAHATDLDRSWSYGDPAGGGPTVSGTAADLAWWLTGRGAGEGLTSDGGELPRIE CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCC EW CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA