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The map label for this gene is aidB [H]

Identifier: 119716580

GI number: 119716580

Start: 2506913

End: 2508586

Strand: Reverse

Name: aidB [H]

Synonym: Noca_2353

Alternate gene names: 119716580

Gene position: 2508586-2506913 (Counterclockwise)

Preceding gene: 119716585

Following gene: 119716578

Centisome position: 50.31

GC content: 73.95

Gene sequence:

>1674_bases
ATGCGATCCGACATCCGCGCATCCGCCAACCAGCCGCCAGCACTGGTTGGTCACAACGTCGTCACGGCCGACCTCGCCCT
CGTCGAGGCGGTCACCCGGCACGCCTCCGCCGACGTGGTCGAGGACCTGGCCGCCCTCGGCGCCGAGGCCGGCACCGACG
AGGCGCGCGAGCACGGCCTGCTCGCGAACCGCAACGAGCCGCGGCTCGCGCCGTACGACCGCTACGGCAACCGGATCGAC
GAGGTCGAGTTCCATCCCTCCTGGCACTGGCTGATGGGCCGCGCCGTCGGCCACGGACTGGCGGCCGCACCCTGGGAGCA
GCAGGAGGCCGGGGCGCCGCACGCGCACGTGCGCCGCGCCGCCGGCTTCATGGCCTGGTCGCACACCGAGGCGGGCCACG
GCTGCCCGATCTCGATGACGTACGCCGCCGTCCCCGCGCTACGCGCCGACGAGGCGCTCGCCAAGGAGTGGACGCCGCTG
CTGGCGTCCACGACGTACGACCCGGGCCTCCGGCTCGCCACGACGAAGGCCGGCGCACTGGCCGGCATGGGGATGACGGA
GAAGCAGGGCGGCTCCGACGTCCGCACCAACGTGACCGAGGCGCGCCCGACCTCCGCGCACGGCGAGTACACCCTCCACG
GGCACAAGTGGTTCACCTCGGCGCCGATGAACGACATGTTCCTGGTCCTCGCCCAGGCCGAGGGGTCGGCCCTGACCTGC
TTCGTGGTCCCCCGCGTGCTCGCCGACGGCACCCGCAACCAGATGGACGTGGTCCGCCTCAAGGACAAGCTCGGCAACCG
CTCGAACGCCTCGTCCGAGCTGGAGCTCGACGGCACCGTCGGCTACCGCCTCGGCGACGAGGGCCGCGGGGTGCGCACCA
TCATCGAGATGGTCGCCGCCACCCGGCTCGACTGCGTGCTCGGGTCGACCTCGCTGATGCGGCGCGCGGTCAACGAGGCG
TCCTGGCACGCCGCGCACCGCACGGCCTTCGGCGCGCTCCTCGCCGACAAGCCGCTGATGCAGAACGTGCTCGCGGACCT
GGCGGTCGAGACGGAGGCGGCGACGGCCCTCGCGATCCGGCTGGCGGCCGCTGTCGACGGCCTGGGCCGGCCCGACGCCG
CGGAGGCGGCGCACGAGGCCGCGTTCCGCCGGATCGCGCTCCCGCTCGCGAAGTTCTGGGTCTGCAAGCGCACCCCGTTC
CTGGTGGCGGAGGCGCTGGAGTGCCTGGGCGGCAACGGCTACGTCGAGGACTCGGGGATGCCGTTGCTGTACCGCGAGGC
CCCGGTCAACTCCGTCTGGGAGGGGTCGGGCAACGTCAACGCCCTCGACGTGCTGCGCGCCCTGGGCCGCGAGCCCGAGG
TGCTCGACGCCTGGATCACCGAGGTGGGCCGGGCCCGCGGCGGCGACGCCCGCCTCGACCGGGCGATCGAGGACACGCTG
GCGCTGATCGGATCCCTCCTGGGCGACCCCGACTCGCTCGAGGTCAACGCCCGGCGGCTTGCCAGCCGGATGGCGCTGTG
CCTGCAGGGCGCGCTGCTCGTGCGCTTCGCCCCCCCGGAGGTCGCCGACGTGTTCTGCGCCTCCCGGCTCGGCACGTCGT
ACGACGGCGTCTTCGGCACCCTGGACGGCGGCGACCTGCGCGCGATCGTCGAGCGGGCGACGCCGACGCTCTGA

Upstream 100 bases:

>100_bases
TCGCGCAGCCGGCGCAGCCGGAGGGCCAGCGGGGAGGCCCGGGGGGCGCGTTCCTGGCGCTCTGCTCCCTCCGCCCCGGA
CATGGATCTACCGTAGGCCC

Downstream 100 bases:

>100_bases
CCGGAGCCGCTCGAGGCTCAGGCCAGGTCGAGGCCTGGGTAGAGCGGGTGCTTGTCGAGCAGCTCCGCGGCGGCGGCGTG
GACCTTGTCGGCCACGCCGT

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MRSDIRASANQPPALVGHNVVTADLALVEAVTRHASADVVEDLAALGAEAGTDEAREHGLLANRNEPRLAPYDRYGNRID
EVEFHPSWHWLMGRAVGHGLAAAPWEQQEAGAPHAHVRRAAGFMAWSHTEAGHGCPISMTYAAVPALRADEALAKEWTPL
LASTTYDPGLRLATTKAGALAGMGMTEKQGGSDVRTNVTEARPTSAHGEYTLHGHKWFTSAPMNDMFLVLAQAEGSALTC
FVVPRVLADGTRNQMDVVRLKDKLGNRSNASSELELDGTVGYRLGDEGRGVRTIIEMVAATRLDCVLGSTSLMRRAVNEA
SWHAAHRTAFGALLADKPLMQNVLADLAVETEAATALAIRLAAAVDGLGRPDAAEAAHEAAFRRIALPLAKFWVCKRTPF
LVAEALECLGGNGYVEDSGMPLLYREAPVNSVWEGSGNVNALDVLRALGREPEVLDAWITEVGRARGGDARLDRAIEDTL
ALIGSLLGDPDSLEVNARRLASRMALCLQGALLVRFAPPEVADVFCASRLGTSYDGVFGTLDGGDLRAIVERATPTL

Sequences:

>Translated_557_residues
MRSDIRASANQPPALVGHNVVTADLALVEAVTRHASADVVEDLAALGAEAGTDEAREHGLLANRNEPRLAPYDRYGNRID
EVEFHPSWHWLMGRAVGHGLAAAPWEQQEAGAPHAHVRRAAGFMAWSHTEAGHGCPISMTYAAVPALRADEALAKEWTPL
LASTTYDPGLRLATTKAGALAGMGMTEKQGGSDVRTNVTEARPTSAHGEYTLHGHKWFTSAPMNDMFLVLAQAEGSALTC
FVVPRVLADGTRNQMDVVRLKDKLGNRSNASSELELDGTVGYRLGDEGRGVRTIIEMVAATRLDCVLGSTSLMRRAVNEA
SWHAAHRTAFGALLADKPLMQNVLADLAVETEAATALAIRLAAAVDGLGRPDAAEAAHEAAFRRIALPLAKFWVCKRTPF
LVAEALECLGGNGYVEDSGMPLLYREAPVNSVWEGSGNVNALDVLRALGREPEVLDAWITEVGRARGGDARLDRAIEDTL
ALIGSLLGDPDSLEVNARRLASRMALCLQGALLVRFAPPEVADVFCASRLGTSYDGVFGTLDGGDLRAIVERATPTL
>Mature_557_residues
MRSDIRASANQPPALVGHNVVTADLALVEAVTRHASADVVEDLAALGAEAGTDEAREHGLLANRNEPRLAPYDRYGNRID
EVEFHPSWHWLMGRAVGHGLAAAPWEQQEAGAPHAHVRRAAGFMAWSHTEAGHGCPISMTYAAVPALRADEALAKEWTPL
LASTTYDPGLRLATTKAGALAGMGMTEKQGGSDVRTNVTEARPTSAHGEYTLHGHKWFTSAPMNDMFLVLAQAEGSALTC
FVVPRVLADGTRNQMDVVRLKDKLGNRSNASSELELDGTVGYRLGDEGRGVRTIIEMVAATRLDCVLGSTSLMRRAVNEA
SWHAAHRTAFGALLADKPLMQNVLADLAVETEAATALAIRLAAAVDGLGRPDAAEAAHEAAFRRIALPLAKFWVCKRTPF
LVAEALECLGGNGYVEDSGMPLLYREAPVNSVWEGSGNVNALDVLRALGREPEVLDAWITEVGRARGGDARLDRAIEDTL
ALIGSLLGDPDSLEVNARRLASRMALCLQGALLVRFAPPEVADVFCASRLGTSYDGVFGTLDGGDLRAIVERATPTL

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI21361497, Length=363, Percent_Identity=26.1707988980716, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI226958414, Length=309, Percent_Identity=25.8899676375405, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI226958412, Length=309, Percent_Identity=25.8899676375405, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI4557235, Length=278, Percent_Identity=24.8201438848921, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI76496475, Length=278, Percent_Identity=24.8201438848921, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI7656849, Length=280, Percent_Identity=27.1428571428571, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI187960098, Length=275, Percent_Identity=26.5454545454545, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI4557231, Length=275, Percent_Identity=26.5454545454545, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI4501859, Length=284, Percent_Identity=24.6478873239437, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI4557233, Length=279, Percent_Identity=25.8064516129032, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI4503943, Length=280, Percent_Identity=27.1428571428571, Blast_Score=67, Evalue=6e-11,
Organism=Escherichia coli, GI87082384, Length=524, Percent_Identity=45.8015267175573, Blast_Score=397, Evalue=1e-111,
Organism=Caenorhabditis elegans, GI86563383, Length=526, Percent_Identity=31.7490494296578, Blast_Score=206, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI86563381, Length=526, Percent_Identity=31.7490494296578, Blast_Score=206, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI17538396, Length=407, Percent_Identity=27.5184275184275, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17506239, Length=281, Percent_Identity=26.6903914590747, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508101, Length=270, Percent_Identity=25.5555555555556, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17569725, Length=280, Percent_Identity=25, Blast_Score=79, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17534899, Length=280, Percent_Identity=23.9285714285714, Blast_Score=72, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17570075, Length=280, Percent_Identity=24.2857142857143, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71985184, Length=272, Percent_Identity=23.1617647058824, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71990804, Length=220, Percent_Identity=28.1818181818182, Blast_Score=69, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24646207, Length=289, Percent_Identity=26.2975778546713, Blast_Score=79, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281363737, Length=372, Percent_Identity=23.3870967741935, Blast_Score=79, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21355753, Length=421, Percent_Identity=23.7529691211401, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21356377, Length=275, Percent_Identity=25.0909090909091, Blast_Score=71, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24666513, Length=289, Percent_Identity=23.5294117647059, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24660351, Length=280, Percent_Identity=24.2857142857143, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 59460; Mature: 59460

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSDIRASANQPPALVGHNVVTADLALVEAVTRHASADVVEDLAALGAEAGTDEAREHGL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC
LANRNEPRLAPYDRYGNRIDEVEFHPSWHWLMGRAVGHGLAAAPWEQQEAGAPHAHVRRA
CCCCCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHH
AGFMAWSHTEAGHGCPISMTYAAVPALRADEALAKEWTPLLASTTYDPGLRLATTKAGAL
HHHHEECCCCCCCCCCEEEHHHHCCCHHHHHHHHHHHCHHHHCCCCCCCCEEEECCCCHH
AGMGMTEKQGGSDVRTNVTEARPTSAHGEYTLHGHKWFTSAPMNDMFLVLAQAEGSALTC
HCCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEECCEEECCCCCCCEEEEEEECCCCEEEE
FVVPRVLADGTRNQMDVVRLKDKLGNRSNASSELELDGTVGYRLGDEGRGVRTIIEMVAA
EEHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHH
TRLDCVLGSTSLMRRAVNEASWHAAHRTAFGALLADKPLMQNVLADLAVETEAATALAIR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LAAAVDGLGRPDAAEAAHEAAFRRIALPLAKFWVCKRTPFLVAEALECLGGNGYVEDSGM
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
PLLYREAPVNSVWEGSGNVNALDVLRALGREPEVLDAWITEVGRARGGDARLDRAIEDTL
EEEEECCCCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ALIGSLLGDPDSLEVNARRLASRMALCLQGALLVRFAPPEVADVFCASRLGTSYDGVFGT
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEE
LDGGDLRAIVERATPTL
CCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MRSDIRASANQPPALVGHNVVTADLALVEAVTRHASADVVEDLAALGAEAGTDEAREHGL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC
LANRNEPRLAPYDRYGNRIDEVEFHPSWHWLMGRAVGHGLAAAPWEQQEAGAPHAHVRRA
CCCCCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHH
AGFMAWSHTEAGHGCPISMTYAAVPALRADEALAKEWTPLLASTTYDPGLRLATTKAGAL
HHHHEECCCCCCCCCCEEEHHHHCCCHHHHHHHHHHHCHHHHCCCCCCCCEEEECCCCHH
AGMGMTEKQGGSDVRTNVTEARPTSAHGEYTLHGHKWFTSAPMNDMFLVLAQAEGSALTC
HCCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEECCEEECCCCCCCEEEEEEECCCCEEEE
FVVPRVLADGTRNQMDVVRLKDKLGNRSNASSELELDGTVGYRLGDEGRGVRTIIEMVAA
EEHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHH
TRLDCVLGSTSLMRRAVNEASWHAAHRTAFGALLADKPLMQNVLADLAVETEAATALAIR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LAAAVDGLGRPDAAEAAHEAAFRRIALPLAKFWVCKRTPFLVAEALECLGGNGYVEDSGM
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCC
PLLYREAPVNSVWEGSGNVNALDVLRALGREPEVLDAWITEVGRARGGDARLDRAIEDTL
EEEEECCCCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ALIGSLLGDPDSLEVNARRLASRMALCLQGALLVRFAPPEVADVFCASRLGTSYDGVFGT
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEE
LDGGDLRAIVERATPTL
CCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]