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The map label for this gene is xerD [C]

Identifier: 119716520

GI number: 119716520

Start: 2443413

End: 2444600

Strand: Reverse

Name: xerD [C]

Synonym: Noca_2293

Alternate gene names: 119716520

Gene position: 2444600-2443413 (Counterclockwise)

Preceding gene: 119716521

Following gene: 119716519

Centisome position: 49.03

GC content: 63.22

Gene sequence:

>1188_bases
ATGGCAAGCATTAGCTCTGGGCGATCATCCGACGACGGCAGCCCTCGTTACGTCGTCAACTACCGAGATCCCGAGGGGCG
GCAGCGTCGCAAGACCTTCCGACGCAAGGCCGAGGCGGTTGCGTTCCGCAACACGGTCGAGGCGGACAAGCTTCGTGGGA
CCTACCTTGATGTCGACGCCGGCAAGATCTCGTTTCGCGCCTATGCCGAGGAGTGGCTCGATAGTCGGACCTTCAGTCCG
CTGACCTACGAGGCGACCGAGTTGCGACTCAGGCTCCATGTGTTCCCGACGCTAGGACACCTCGAACTGCGACAAATCAA
GCCGTCGACCATCCAGAAGCTCCTACGGTCGATGGAGATGGCCGAGACCTACCGGCGCGTCATCTTCTCTAACGTGTCTG
CCATCTTCTCGGCTGCGGTCGACGACGACATGATTGCCAAGAATCCGTGCAAAGCGAGTTCAGTGACAAGACCCGCAACG
TCGCGCCGCAAGGTGGTGCCTTGGCCGACCGAGTGGGTCTCCTCCATGCACGACGCGCTTCCGCCGCAGTACAGGATCGC
AGTCACGTTGGGATCGGGGCTGGGACTACGCCAAGGCGAGGTATTTGGGCTCGCAGTCGAGGACGTCGACTTCCTCCGCG
GAGTTGTGGAGGTCAGGCGGCAAGTCAAGGTGTTCGGAGGCAACCGCCTGGTCTTCGGCCTGCCGAAGGGCGACAAGACC
CGAACCGTCCCCTTGCCCGAGAGCGTCGCGACGGAACTCAGCAACCACCTCGCTACCTACCCGCGACGGAGCATCACGCT
TCCGTGGGGAACGCCCCAAGCGGACAAGAAGGCGAGCGCAGGGCTCATACTCACCACACGCGAGCGTTCTGCCCTCAACC
GCAACTACTTCAACACACGGCTCTGGAAGCCCGGCCAAGCCCATGTGGGCATCGAGCAAGCGCGTGACAACGGCATGCAC
GCCCTACGCCACTGGTACGCCTCCGTGCTCCTCGACGCCGGCGAATCGATTCGCGCCGTATCCGAATACCTCGGCCACAG
CGACCCCGGCTTCACCTTGCGCACCTACACCCATCTCATGCCCAGCAGCACGGAGCGAACCCGTGCAGCAGTGGATGCGG
CCTTTGCAGCCGGGCGCCACGCGGGCAAAGAGGCTGACACAGAACTCGAGCAACCCTCTCGGGGCTAG

Upstream 100 bases:

>100_bases
ACAGGCCACCAGCCTGGCCCGGAATCGACTCCATCGCCACCAGCGAGCAGATGCTCATCAGCATGGTTGGTCACCCGGTC
CGACGCTGCCGAGGGCTGCC

Downstream 100 bases:

>100_bases
CCGCGGATCCGAGACCGCCCGCGCCCCTCAGCCGGCGCGCTCATCGCTTTTTGCGGCACGACGGCGGCGAACCTGGCGGC
CGCCGCCCGCTGCCGAGCTG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MASISSGRSSDDGSPRYVVNYRDPEGRQRRKTFRRKAEAVAFRNTVEADKLRGTYLDVDAGKISFRAYAEEWLDSRTFSP
LTYEATELRLRLHVFPTLGHLELRQIKPSTIQKLLRSMEMAETYRRVIFSNVSAIFSAAVDDDMIAKNPCKASSVTRPAT
SRRKVVPWPTEWVSSMHDALPPQYRIAVTLGSGLGLRQGEVFGLAVEDVDFLRGVVEVRRQVKVFGGNRLVFGLPKGDKT
RTVPLPESVATELSNHLATYPRRSITLPWGTPQADKKASAGLILTTRERSALNRNYFNTRLWKPGQAHVGIEQARDNGMH
ALRHWYASVLLDAGESIRAVSEYLGHSDPGFTLRTYTHLMPSSTERTRAAVDAAFAAGRHAGKEADTELEQPSRG

Sequences:

>Translated_395_residues
MASISSGRSSDDGSPRYVVNYRDPEGRQRRKTFRRKAEAVAFRNTVEADKLRGTYLDVDAGKISFRAYAEEWLDSRTFSP
LTYEATELRLRLHVFPTLGHLELRQIKPSTIQKLLRSMEMAETYRRVIFSNVSAIFSAAVDDDMIAKNPCKASSVTRPAT
SRRKVVPWPTEWVSSMHDALPPQYRIAVTLGSGLGLRQGEVFGLAVEDVDFLRGVVEVRRQVKVFGGNRLVFGLPKGDKT
RTVPLPESVATELSNHLATYPRRSITLPWGTPQADKKASAGLILTTRERSALNRNYFNTRLWKPGQAHVGIEQARDNGMH
ALRHWYASVLLDAGESIRAVSEYLGHSDPGFTLRTYTHLMPSSTERTRAAVDAAFAAGRHAGKEADTELEQPSRG
>Mature_394_residues
ASISSGRSSDDGSPRYVVNYRDPEGRQRRKTFRRKAEAVAFRNTVEADKLRGTYLDVDAGKISFRAYAEEWLDSRTFSPL
TYEATELRLRLHVFPTLGHLELRQIKPSTIQKLLRSMEMAETYRRVIFSNVSAIFSAAVDDDMIAKNPCKASSVTRPATS
RRKVVPWPTEWVSSMHDALPPQYRIAVTLGSGLGLRQGEVFGLAVEDVDFLRGVVEVRRQVKVFGGNRLVFGLPKGDKTR
TVPLPESVATELSNHLATYPRRSITLPWGTPQADKKASAGLILTTRERSALNRNYFNTRLWKPGQAHVGIEQARDNGMHA
LRHWYASVLLDAGESIRAVSEYLGHSDPGFTLRTYTHLMPSSTERTRAAVDAAFAAGRHAGKEADTELEQPSRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44144; Mature: 44012

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASISSGRSSDDGSPRYVVNYRDPEGRQRRKTFRRKAEAVAFRNTVEADKLRGTYLDVDA
CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEECCC
GKISFRAYAEEWLDSRTFSPLTYEATELRLRLHVFPTLGHLELRQIKPSTIQKLLRSMEM
CCCHHHHHHHHHHCCCCCCCCEEEHEEEEEEEEEECCCCCEEHHHCCHHHHHHHHHHHHH
AETYRRVIFSNVSAIFSAAVDDDMIAKNPCKASSVTRPATSRRKVVPWPTEWVSSMHDAL
HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
PPQYRIAVTLGSGLGLRQGEVFGLAVEDVDFLRGVVEVRRQVKVFGGNRLVFGLPKGDKT
CCCEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCCC
RTVPLPESVATELSNHLATYPRRSITLPWGTPQADKKASAGLILTTRERSALNRNYFNTR
EECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCCC
LWKPGQAHVGIEQARDNGMHALRHWYASVLLDAGESIRAVSEYLGHSDPGFTLRTYTHLM
CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEHHHHHC
PSSTERTRAAVDAAFAAGRHAGKEADTELEQPSRG
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASISSGRSSDDGSPRYVVNYRDPEGRQRRKTFRRKAEAVAFRNTVEADKLRGTYLDVDA
CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEECCC
GKISFRAYAEEWLDSRTFSPLTYEATELRLRLHVFPTLGHLELRQIKPSTIQKLLRSMEM
CCCHHHHHHHHHHCCCCCCCCEEEHEEEEEEEEEECCCCCEEHHHCCHHHHHHHHHHHHH
AETYRRVIFSNVSAIFSAAVDDDMIAKNPCKASSVTRPATSRRKVVPWPTEWVSSMHDAL
HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
PPQYRIAVTLGSGLGLRQGEVFGLAVEDVDFLRGVVEVRRQVKVFGGNRLVFGLPKGDKT
CCCEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCCC
RTVPLPESVATELSNHLATYPRRSITLPWGTPQADKKASAGLILTTRERSALNRNYFNTR
EECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCCC
LWKPGQAHVGIEQARDNGMHALRHWYASVLLDAGESIRAVSEYLGHSDPGFTLRTYTHLM
CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEHHHHHC
PSSTERTRAAVDAAFAAGRHAGKEADTELEQPSRG
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]