| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715284
Identifier: 119715284
GI number: 119715284
Start: 1100570
End: 1101388
Strand: Direct
Name: 119715284
Synonym: Noca_1043
Alternate gene names: NA
Gene position: 1100570-1101388 (Clockwise)
Preceding gene: 119715283
Following gene: 119715286
Centisome position: 22.07
GC content: 65.2
Gene sequence:
>819_bases ATGATCACCTCGGACACCCAAGAGATTCCTGTTCTGGCGTGGAACGGCAATGCTCGCGGGGCGGTCGTCGACGCCGCCCG CGGGATACTGGCCACCGTAGGCCTCGTTCGGCTGACAGGATTCCCCGCTTCTGCAGCGCAGTTCGTGCAGTTCTTGCGCG CATTCGGACAGCCTCTCGGCTACTACGGAGACGATGCCGGGACCCACCCAGAGGACCGCGCCATCTGGCGGATCAAGTAC GACCCCGCTGCGGCGTTCCGTGGCGAGACGCACGCAGTTGAAGGCCCACTGCATGCGCATTCGTCGCAGTCCATGCGTGA CCCGCGGCCGCGCTTCTTCAGCATGCTGATGGTCGATGGCGGCTGGCAGGGCCGGCCATTCGGGATGAACGGAGAGTCGA TTCTCGCGTCCTGGCGGGATGCACTGGAACGCATGCGGCACACGCTCGGAACCGAGTACGCAGCGACGATGGAGACCCTT CGCGCGCCGGTGCTATTCCCCGACGGCGTGCGCCGGCCGCTCGTTTACCCGCTGGCGTCGTCGAAGTCGGAGGATGACCT CGGCGTGCGTATGAAGAGCGACCTCATGCTCTTCCTCACCGGACATTGTCCCGAGGAACCTGCGGCGCAGGCTGTAGCGA GGTTGGCCGACGCCGCAGCACACACTGCCCTTCGTGTTCAGTTGCAGTCGGGAGACCTCGTCCTCCTCGATAACGACCGG TGGGGGCACGGGCGCGAGTCAGTTGTTGGTCGCGAAGCGCATGCCGACGGATCCGTTCACCTCAATCCGAGAGAGCTCTG GAGCGCTACGGTCGCGTGA
Upstream 100 bases:
>100_bases ATGGCATCGTGCGGTTCTCCGACCTGGATCTCATGAGACCGTGGGAAGCGTGCGGAGCTGCATTCGCGGAGGTCCCGTAC GGACGCGCTGAGGTGCTGGC
Downstream 100 bases:
>100_bases CGGCTCGGCCTCCCGAAGCCACGAGCAGTCGCGGACCCCGCGGTCGGTCAGCGATCTCGTGCGTGCGGAAAGGGCCCGGC GTAACACGCGCCGCGTAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MITSDTQEIPVLAWNGNARGAVVDAARGILATVGLVRLTGFPASAAQFVQFLRAFGQPLGYYGDDAGTHPEDRAIWRIKY DPAAAFRGETHAVEGPLHAHSSQSMRDPRPRFFSMLMVDGGWQGRPFGMNGESILASWRDALERMRHTLGTEYAATMETL RAPVLFPDGVRRPLVYPLASSKSEDDLGVRMKSDLMLFLTGHCPEEPAAQAVARLADAAAHTALRVQLQSGDLVLLDNDR WGHGRESVVGREAHADGSVHLNPRELWSATVA
Sequences:
>Translated_272_residues MITSDTQEIPVLAWNGNARGAVVDAARGILATVGLVRLTGFPASAAQFVQFLRAFGQPLGYYGDDAGTHPEDRAIWRIKY DPAAAFRGETHAVEGPLHAHSSQSMRDPRPRFFSMLMVDGGWQGRPFGMNGESILASWRDALERMRHTLGTEYAATMETL RAPVLFPDGVRRPLVYPLASSKSEDDLGVRMKSDLMLFLTGHCPEEPAAQAVARLADAAAHTALRVQLQSGDLVLLDNDR WGHGRESVVGREAHADGSVHLNPRELWSATVA >Mature_272_residues MITSDTQEIPVLAWNGNARGAVVDAARGILATVGLVRLTGFPASAAQFVQFLRAFGQPLGYYGDDAGTHPEDRAIWRIKY DPAAAFRGETHAVEGPLHAHSSQSMRDPRPRFFSMLMVDGGWQGRPFGMNGESILASWRDALERMRHTLGTEYAATMETL RAPVLFPDGVRRPLVYPLASSKSEDDLGVRMKSDLMLFLTGHCPEEPAAQAVARLADAAAHTALRVQLQSGDLVLLDNDR WGHGRESVVGREAHADGSVHLNPRELWSATVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29679; Mature: 29679
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITSDTQEIPVLAWNGNARGAVVDAARGILATVGLVRLTGFPASAAQFVQFLRAFGQPLG CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC YYGDDAGTHPEDRAIWRIKYDPAAAFRGETHAVEGPLHAHSSQSMRDPRPRFFSMLMVDG CCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECC GWQGRPFGMNGESILASWRDALERMRHTLGTEYAATMETLRAPVLFPDGVRRPLVYPLAS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEEECCC SKSEDDLGVRMKSDLMLFLTGHCPEEPAAQAVARLADAAAHTALRVQLQSGDLVLLDNDR CCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCEEEEECCC WGHGRESVVGREAHADGSVHLNPRELWSATVA CCCCCHHHCCCCCCCCCCEEECHHHHHHHCCC >Mature Secondary Structure MITSDTQEIPVLAWNGNARGAVVDAARGILATVGLVRLTGFPASAAQFVQFLRAFGQPLG CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC YYGDDAGTHPEDRAIWRIKYDPAAAFRGETHAVEGPLHAHSSQSMRDPRPRFFSMLMVDG CCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECC GWQGRPFGMNGESILASWRDALERMRHTLGTEYAATMETLRAPVLFPDGVRRPLVYPLAS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEEECCC SKSEDDLGVRMKSDLMLFLTGHCPEEPAAQAVARLADAAAHTALRVQLQSGDLVLLDNDR CCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCEEEEECCC WGHGRESVVGREAHADGSVHLNPRELWSATVA CCCCCHHHCCCCCCCCCCEEECHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA