| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715281
Identifier: 119715281
GI number: 119715281
Start: 1097031
End: 1097981
Strand: Reverse
Name: 119715281
Synonym: Noca_1040
Alternate gene names: NA
Gene position: 1097981-1097031 (Counterclockwise)
Preceding gene: 119715285
Following gene: 119715280
Centisome position: 22.02
GC content: 63.2
Gene sequence:
>951_bases ATGGGCGCTTTCCCATCGGACGACTTGATCGCTCAGGTCACAGACCGCACCCCAAAGGTGACTAATGGGACAGACAAGGT CCCGCAGTCGAAGGTGACATGGAGAGGCGACAAGCGGGGGGAACGGACCTTGGACTGGGGTGATTGCCCTGGTCCCTACC ACGCCTTCGAGTTCTTGCGCTTCGGGCTGATGGATACGAAGTCACCGAGGGAGGTGGACGCGAGGCGGAAGTCGGATCCG GCGTCGGCCAAGCTCTACCGGCGGGGGCCGAAGGCAAAGGATTTCTTCGATCGCGAGTCGATGTACAACCTCGGTGCGCT CTGCAAGGGCATCGGGACCGGACCTGAGGTGCAAGCCTGGATCACGGACTTCTACGACGCATACGAACTTAGCGAGTCCC GCGGGGTAGTTGTCGTCGTCAACCGCAAGCGCACGCTGCCATTCGGAAAGGAAAGGGTGCACGCGGCAATCGCCGAAACC CGCGGAGCATGGGGTGCGCCGCCGAAACATGCTGACGCTTCGGTCGCTCATGGAGGCGAGGAGGAGTTCAAGAGCTCCGG TCCTCTCTGTGGCCCGAGCGGCGAGATCGAACTGGAGCAGGAAGGACGTCACTTCCGCCTGGCTGGGATTGTTCGGCCTA CCGGCGCCCGGCAACCGTGGGGACTCCAGTTCGAGCTTCATGACGGCGAGCAGGCGATCGCGGTTAAGAAGTCAGGCGAT GCCGACGGAGCCCTAGTGGTCGTAACCAGCCCGGCGGGCACCCGCCTGCTCCGAGCCGGACGGGATGGAGCGCTCGCAGA TTGGGCTGTTCTAACCTCCGCTCAGGCTGCCAGGGCCAGGTTTCTTGGGGGGAATAATCTCGGGCGAGTGCGTGTGATGC TCCTGGACCGAAGGAGCATTTCGCCGTCGTTCGCCGGACAGGAATTCGTTCGGGCCGAGGCATCCGCATGA
Upstream 100 bases:
>100_bases GCCGCCAGGCGTCTGGGCCTGCCATGCTTCGTCCATGGCCTTCCAACCCGGTCCTGCCGTCTCAGCCCTGCTCACCCTTC GTGAGGTGATCTCGTGGGCG
Downstream 100 bases:
>100_bases CGGAACGGGCGGCGGTCCTCAAGAAGGTGACCGAGGAGCTCGGGGACCGCACACTCGTGTGGTCAGGGATCCGTGGGGAC GACATCGAGCCACTACGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MGAFPSDDLIAQVTDRTPKVTNGTDKVPQSKVTWRGDKRGERTLDWGDCPGPYHAFEFLRFGLMDTKSPREVDARRKSDP ASAKLYRRGPKAKDFFDRESMYNLGALCKGIGTGPEVQAWITDFYDAYELSESRGVVVVVNRKRTLPFGKERVHAAIAET RGAWGAPPKHADASVAHGGEEEFKSSGPLCGPSGEIELEQEGRHFRLAGIVRPTGARQPWGLQFELHDGEQAIAVKKSGD ADGALVVVTSPAGTRLLRAGRDGALADWAVLTSAQAARARFLGGNNLGRVRVMLLDRRSISPSFAGQEFVRAEASA
Sequences:
>Translated_316_residues MGAFPSDDLIAQVTDRTPKVTNGTDKVPQSKVTWRGDKRGERTLDWGDCPGPYHAFEFLRFGLMDTKSPREVDARRKSDP ASAKLYRRGPKAKDFFDRESMYNLGALCKGIGTGPEVQAWITDFYDAYELSESRGVVVVVNRKRTLPFGKERVHAAIAET RGAWGAPPKHADASVAHGGEEEFKSSGPLCGPSGEIELEQEGRHFRLAGIVRPTGARQPWGLQFELHDGEQAIAVKKSGD ADGALVVVTSPAGTRLLRAGRDGALADWAVLTSAQAARARFLGGNNLGRVRVMLLDRRSISPSFAGQEFVRAEASA >Mature_315_residues GAFPSDDLIAQVTDRTPKVTNGTDKVPQSKVTWRGDKRGERTLDWGDCPGPYHAFEFLRFGLMDTKSPREVDARRKSDPA SAKLYRRGPKAKDFFDRESMYNLGALCKGIGTGPEVQAWITDFYDAYELSESRGVVVVVNRKRTLPFGKERVHAAIAETR GAWGAPPKHADASVAHGGEEEFKSSGPLCGPSGEIELEQEGRHFRLAGIVRPTGARQPWGLQFELHDGEQAIAVKKSGDA DGALVVVTSPAGTRLLRAGRDGALADWAVLTSAQAARARFLGGNNLGRVRVMLLDRRSISPSFAGQEFVRAEASA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34363; Mature: 34232
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAFPSDDLIAQVTDRTPKVTNGTDKVPQSKVTWRGDKRGERTLDWGDCPGPYHAFEFLR CCCCCCCCHHEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHH FGLMDTKSPREVDARRKSDPASAKLYRRGPKAKDFFDRESMYNLGALCKGIGTGPEVQAW HHCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH ITDFYDAYELSESRGVVVVVNRKRTLPFGKERVHAAIAETRGAWGAPPKHADASVAHGGE HHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH EEFKSSGPLCGPSGEIELEQEGRHFRLAGIVRPTGARQPWGLQFELHDGEQAIAVKKSGD HHHHHCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEECCC ADGALVVVTSPAGTRLLRAGRDGALADWAVLTSAQAARARFLGGNNLGRVRVMLLDRRSI CCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC SPSFAGQEFVRAEASA CCCCCCHHHHHHCCCC >Mature Secondary Structure GAFPSDDLIAQVTDRTPKVTNGTDKVPQSKVTWRGDKRGERTLDWGDCPGPYHAFEFLR CCCCCCCHHEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHH FGLMDTKSPREVDARRKSDPASAKLYRRGPKAKDFFDRESMYNLGALCKGIGTGPEVQAW HHCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH ITDFYDAYELSESRGVVVVVNRKRTLPFGKERVHAAIAETRGAWGAPPKHADASVAHGGE HHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH EEFKSSGPLCGPSGEIELEQEGRHFRLAGIVRPTGARQPWGLQFELHDGEQAIAVKKSGD HHHHHCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEECCC ADGALVVVTSPAGTRLLRAGRDGALADWAVLTSAQAARARFLGGNNLGRVRVMLLDRRSI CCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC SPSFAGQEFVRAEASA CCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA