Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is 119715214
Identifier: 119715214
GI number: 119715214
Start: 1017010
End: 1019430
Strand: Direct
Name: 119715214
Synonym: Noca_0969
Alternate gene names: NA
Gene position: 1017010-1019430 (Clockwise)
Preceding gene: 119715213
Following gene: 119715216
Centisome position: 20.4
GC content: 73.52
Gene sequence:
>2421_bases ATGGCACGGACCGGGCTGTGGATCCGTTGGTCGTGGCGCGACCTGCGCCGGCGCTGGCCGGTGGTGACGGCGATCGCGCT GGTGATCGCGCTCGGCACCGGCACCTACGCCGGTCTGCTGAGCACCTCCGCGTGGCGCACGCAATCGAACGACGCGAGCT TCGCGCTGCTGGACACCCACGACCTCCGGGTCACCCTGCCCAGCGGCAGCACTACCACCGAGGGCCGGCTGCTGGAGGTG GTGACCGGGCTGGACCGCGCGGGCGACGTCACCGCCGCGCGGGAGCGGCTCATCGTACCGACGCAGATCGCCGGTCCCGG CGGCCTGCTCGTCCCGGGAGAACTCGTCGGCACCGATACCCGGCCCGGCGCGGACGTCGACGGGGTCTACGTGACCCAGG GGCGCGGCCTCACCGACGACGGCGCGGCGACCGTGGTCGCCGAGGACTCGTTCGCGGCCGAGAACGGCCTGCCGGTCGGG AGTGAGGTGACGGTCTCCGGAGGCGCCCGGCTGGAGGTCGTGGGCCGCGGCCAGTCCCCGGAGTACTTCATCGTCACCGG CGGTGAGGGCGGCCTGCCGTTCCTGACCCAGAAGGGGTACGGCGTGCTGTTCGCGTCGCTGCACACCGTGCAGGGCGCGA CCGGCGCGACGGGACAGGTCAACGACCTGGTGCTGACCCTCCGTCCGGGCGCGGACCGCGACGCCGTCGGCGGTGCGCTG GCCGCGGCGCTCGGGTCGACGAGTCCACCCCTGGCCGCCGATGTCACCACGCGCGACGACATCGACGCCTACCGGGTGCT GTACGACGACATCGAGGGCGACGAGCAGCTGTGGCGGATCGTCGCGTTGCTGGTCCTCGTCGGGGCCGCCTTCGCGTCGC TGAACCTCACCACCCGGGTCGTCGAGGCGCAGCGCAGGGAGATCGGCATCGGCATGGCGCTGGGCGTGCCGACCCGCCGG CTGGCCGTCCGGCCGCTGCTCTTCGGCACCCAGGTGGCGATCCTCGGCGTACTGCTCGGGCTGCTCGTCGGGTGGGCGAT CTCGATCCCGCTGCGCAGCGTGTTCATCGACATGCTGCCACTGCCGATCTGGCGCACCCCGCTGCAGACCGACGTGTTCG CGCAGGCGGCCGCGCTCGGCCTGCTGCTGCCGTTCGTGGCGATCGCCTGGCCGGTGTGGCGGGCGGTGCGGGTGCAGCCG GTCGAGGCGATCCGGGTGGGCCACCTCGCGGGCCGGGGCAACGGGCTCGCGCCCCTGGTCGGGCGATTGCGGCTGCCCGG CCGCGGCTACCGCCAGATCCCGCTGCGCAACGTGCTGCGCACGCCCCGGCGTACAGCGCTCACGGTCCTCGGCATCGCGT CCGCGATCACCACGCTGGTCACGACCCTGGGGCTGCTCGACACCTTCGGCGCGACGCTCGACCGAGCCGAGTCCGAGATG ATGCACGCGGCGCCCGACCGGGTCAGCGTCGCCCTGGACACCTTCCAGCCGCTCGCCGGCGACGTCGTCCGTGCCGTGGA GCGGCTGCCCGAGGTGGACGCCGTCGAATCGGGCCTGCGGATGCCCGCGGTCGCCGACCCCGAGGGCGCCGACCTCGAGC TGCTGGTGGACGTCCTGCCCGACGACGCTCGGTGGCAGCCCACGCTGACCGGAGGGGCACGGAGCGGTGGGCTTCTGCTG GCGGAGGAAGCGGCCACGGACCTCGGGGTCGGCGTCGGCGACGAGGTGGTGGTCGACCACCCCGAGATGACACCGACCGG GCTGCGGACGGTGCGGACCACGATGACGGTGGCGGGGCTGCACCCGAACCCCCTGCGGGTCTTCGCCTACCTCGACCCGG CGTCCGCGGACGCGTTCGGCCTGGCGGGTACGGTGAACGTCCTCAGCGTCACTCCGGCCGCCGGGCACAGCCCGGACGAC GTCCGGCGTGCGCTCCTCGGTGTGCCACACGTGGCTTCGGCGCAGACCCCCCAGGCCGCCGTCGACGGGATGCGCGCGAC CCTCGACGAGTTCGTGGGGATCCTGAACGTCGCCGCACTCACCACCCTGCTCCTGGCGCTGCTGATCGCCTTCAACACCA CGAGCATCGCGGTCGACGAGCGCACGCGGGAGCACGCCACGATGCTGGCGTTCGGGCTGCCGGTGCGCACCGTCATGGGG ATGACGGCGGTGGAGACCGTCGTCGTCGGGGCGCTCGGCGCGGTCACCGGCATCGCCGGCGGCTACCTCGTGCTGCGCTG GATGACGGCGACCACCATCGCCGAGGTGATGCCGGAGATCGGGGTCAGCGCGACCCTCTCGAGCACGACGCTGCTCGCCG CGCTCGGCCTCGGGGTCGTCACGGTTGCGCTGGCTCCGGTCTTCACGCTGCGCCGGATGCTGCGCACCGACATCCCGGCC GCGCTGCGCGTCATGGAGTGA
Upstream 100 bases:
>100_bases TGGCCGACCGGGTGATCGAGCTGTCGAGCGGCCGGATCGTCGCCGACGGCGCGCCCCCGGGCGGTCCGGCCGCGATCGCG GACCTGCACTGGTAGTCGCG
Downstream 100 bases:
>100_bases GGGCGCGCGGCAGGGTGCAGGATGCGATCAGCGGCTGTCGGGCGCCCGCCCGAACCGGCGTACCTCCTGTGGCCACCCGC ACGCCTCGGCGATCCGGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 806; Mature: 805
Protein sequence:
>806_residues MARTGLWIRWSWRDLRRRWPVVTAIALVIALGTGTYAGLLSTSAWRTQSNDASFALLDTHDLRVTLPSGSTTTEGRLLEV VTGLDRAGDVTAARERLIVPTQIAGPGGLLVPGELVGTDTRPGADVDGVYVTQGRGLTDDGAATVVAEDSFAAENGLPVG SEVTVSGGARLEVVGRGQSPEYFIVTGGEGGLPFLTQKGYGVLFASLHTVQGATGATGQVNDLVLTLRPGADRDAVGGAL AAALGSTSPPLAADVTTRDDIDAYRVLYDDIEGDEQLWRIVALLVLVGAAFASLNLTTRVVEAQRREIGIGMALGVPTRR LAVRPLLFGTQVAILGVLLGLLVGWAISIPLRSVFIDMLPLPIWRTPLQTDVFAQAAALGLLLPFVAIAWPVWRAVRVQP VEAIRVGHLAGRGNGLAPLVGRLRLPGRGYRQIPLRNVLRTPRRTALTVLGIASAITTLVTTLGLLDTFGATLDRAESEM MHAAPDRVSVALDTFQPLAGDVVRAVERLPEVDAVESGLRMPAVADPEGADLELLVDVLPDDARWQPTLTGGARSGGLLL AEEAATDLGVGVGDEVVVDHPEMTPTGLRTVRTTMTVAGLHPNPLRVFAYLDPASADAFGLAGTVNVLSVTPAAGHSPDD VRRALLGVPHVASAQTPQAAVDGMRATLDEFVGILNVAALTTLLLALLIAFNTTSIAVDERTREHATMLAFGLPVRTVMG MTAVETVVVGALGAVTGIAGGYLVLRWMTATTIAEVMPEIGVSATLSSTTLLAALGLGVVTVALAPVFTLRRMLRTDIPA ALRVME
Sequences:
>Translated_806_residues MARTGLWIRWSWRDLRRRWPVVTAIALVIALGTGTYAGLLSTSAWRTQSNDASFALLDTHDLRVTLPSGSTTTEGRLLEV VTGLDRAGDVTAARERLIVPTQIAGPGGLLVPGELVGTDTRPGADVDGVYVTQGRGLTDDGAATVVAEDSFAAENGLPVG SEVTVSGGARLEVVGRGQSPEYFIVTGGEGGLPFLTQKGYGVLFASLHTVQGATGATGQVNDLVLTLRPGADRDAVGGAL AAALGSTSPPLAADVTTRDDIDAYRVLYDDIEGDEQLWRIVALLVLVGAAFASLNLTTRVVEAQRREIGIGMALGVPTRR LAVRPLLFGTQVAILGVLLGLLVGWAISIPLRSVFIDMLPLPIWRTPLQTDVFAQAAALGLLLPFVAIAWPVWRAVRVQP VEAIRVGHLAGRGNGLAPLVGRLRLPGRGYRQIPLRNVLRTPRRTALTVLGIASAITTLVTTLGLLDTFGATLDRAESEM MHAAPDRVSVALDTFQPLAGDVVRAVERLPEVDAVESGLRMPAVADPEGADLELLVDVLPDDARWQPTLTGGARSGGLLL AEEAATDLGVGVGDEVVVDHPEMTPTGLRTVRTTMTVAGLHPNPLRVFAYLDPASADAFGLAGTVNVLSVTPAAGHSPDD VRRALLGVPHVASAQTPQAAVDGMRATLDEFVGILNVAALTTLLLALLIAFNTTSIAVDERTREHATMLAFGLPVRTVMG MTAVETVVVGALGAVTGIAGGYLVLRWMTATTIAEVMPEIGVSATLSSTTLLAALGLGVVTVALAPVFTLRRMLRTDIPA ALRVME >Mature_805_residues ARTGLWIRWSWRDLRRRWPVVTAIALVIALGTGTYAGLLSTSAWRTQSNDASFALLDTHDLRVTLPSGSTTTEGRLLEVV TGLDRAGDVTAARERLIVPTQIAGPGGLLVPGELVGTDTRPGADVDGVYVTQGRGLTDDGAATVVAEDSFAAENGLPVGS EVTVSGGARLEVVGRGQSPEYFIVTGGEGGLPFLTQKGYGVLFASLHTVQGATGATGQVNDLVLTLRPGADRDAVGGALA AALGSTSPPLAADVTTRDDIDAYRVLYDDIEGDEQLWRIVALLVLVGAAFASLNLTTRVVEAQRREIGIGMALGVPTRRL AVRPLLFGTQVAILGVLLGLLVGWAISIPLRSVFIDMLPLPIWRTPLQTDVFAQAAALGLLLPFVAIAWPVWRAVRVQPV EAIRVGHLAGRGNGLAPLVGRLRLPGRGYRQIPLRNVLRTPRRTALTVLGIASAITTLVTTLGLLDTFGATLDRAESEMM HAAPDRVSVALDTFQPLAGDVVRAVERLPEVDAVESGLRMPAVADPEGADLELLVDVLPDDARWQPTLTGGARSGGLLLA EEAATDLGVGVGDEVVVDHPEMTPTGLRTVRTTMTVAGLHPNPLRVFAYLDPASADAFGLAGTVNVLSVTPAAGHSPDDV RRALLGVPHVASAQTPQAAVDGMRATLDEFVGILNVAALTTLLLALLIAFNTTSIAVDERTREHATMLAFGLPVRTVMGM TAVETVVVGALGAVTGIAGGYLVLRWMTATTIAEVMPEIGVSATLSSTTLLAALGLGVVTVALAPVFTLRRMLRTDIPAA LRVME
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84406; Mature: 84274
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTGLWIRWSWRDLRRRWPVVTAIALVIALGTGTYAGLLSTSAWRTQSNDASFALLDTH CCCCCEEEEECHHHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEEECC DLRVTLPSGSTTTEGRLLEVVTGLDRAGDVTAARERLIVPTQIAGPGGLLVPGELVGTDT CEEEEECCCCCCCCCHHHHHHHCCCCCCCCHHHHCCEEEEEEECCCCCEECCCCEECCCC RPGADVDGVYVTQGRGLTDDGAATVVAEDSFAAENGLPVGSEVTVSGGARLEVVGRGQSP CCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEECCCCC EYFIVTGGEGGLPFLTQKGYGVLFASLHTVQGATGATGQVNDLVLTLRPGADRDAVGGAL CEEEEECCCCCCCCEECCCCEEEEEEHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHH AAALGSTSPPLAADVTTRDDIDAYRVLYDDIEGDEQLWRIVALLVLVGAAFASLNLTTRV HHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VEAQRREIGIGMALGVPTRRLAVRPLLFGTQVAILGVLLGLLVGWAISIPLRSVFIDMLP HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LPIWRTPLQTDVFAQAAALGLLLPFVAIAWPVWRAVRVQPVEAIRVGHLAGRGNGLAPLV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH GRLRLPGRGYRQIPLRNVLRTPRRTALTVLGIASAITTLVTTLGLLDTFGATLDRAESEM HCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MHAAPDRVSVALDTFQPLAGDVVRAVERLPEVDAVESGLRMPAVADPEGADLELLVDVLP HHCCCCCEEEEHHHHCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECC DDARWQPTLTGGARSGGLLLAEEAATDLGVGVGDEVVVDHPEMTPTGLRTVRTTMTVAGL CCCCCCCEECCCCCCCCEEEEECHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHEEEECC HPNPLRVFAYLDPASADAFGLAGTVNVLSVTPAAGHSPDDVRRALLGVPHVASAQTPQAA CCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHH VDGMRATLDEFVGILNVAALTTLLLALLIAFNTTSIAVDERTREHATMLAFGLPVRTVMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCHHHHHH MTAVETVVVGALGAVTGIAGGYLVLRWMTATTIAEVMPEIGVSATLSSTTLLAALGLGVV HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHH TVALAPVFTLRRMLRTDIPAALRVME HHHHHHHHHHHHHHHHCCCHHHHCCC >Mature Secondary Structure ARTGLWIRWSWRDLRRRWPVVTAIALVIALGTGTYAGLLSTSAWRTQSNDASFALLDTH CCCCEEEEECHHHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEEECC DLRVTLPSGSTTTEGRLLEVVTGLDRAGDVTAARERLIVPTQIAGPGGLLVPGELVGTDT CEEEEECCCCCCCCCHHHHHHHCCCCCCCCHHHHCCEEEEEEECCCCCEECCCCEECCCC RPGADVDGVYVTQGRGLTDDGAATVVAEDSFAAENGLPVGSEVTVSGGARLEVVGRGQSP CCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEECCCCC EYFIVTGGEGGLPFLTQKGYGVLFASLHTVQGATGATGQVNDLVLTLRPGADRDAVGGAL CEEEEECCCCCCCCEECCCCEEEEEEHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHH AAALGSTSPPLAADVTTRDDIDAYRVLYDDIEGDEQLWRIVALLVLVGAAFASLNLTTRV HHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VEAQRREIGIGMALGVPTRRLAVRPLLFGTQVAILGVLLGLLVGWAISIPLRSVFIDMLP HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC LPIWRTPLQTDVFAQAAALGLLLPFVAIAWPVWRAVRVQPVEAIRVGHLAGRGNGLAPLV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH GRLRLPGRGYRQIPLRNVLRTPRRTALTVLGIASAITTLVTTLGLLDTFGATLDRAESEM HCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MHAAPDRVSVALDTFQPLAGDVVRAVERLPEVDAVESGLRMPAVADPEGADLELLVDVLP HHCCCCCEEEEHHHHCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECC DDARWQPTLTGGARSGGLLLAEEAATDLGVGVGDEVVVDHPEMTPTGLRTVRTTMTVAGL CCCCCCCEECCCCCCCCEEEEECHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHEEEECC HPNPLRVFAYLDPASADAFGLAGTVNVLSVTPAAGHSPDDVRRALLGVPHVASAQTPQAA CCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHH VDGMRATLDEFVGILNVAALTTLLLALLIAFNTTSIAVDERTREHATMLAFGLPVRTVMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCHHHHHH MTAVETVVVGALGAVTGIAGGYLVLRWMTATTIAEVMPEIGVSATLSSTTLLAALGLGVV HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHH TVALAPVFTLRRMLRTDIPAALRVME HHHHHHHHHHHHHHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA