BacMap

Definition	Nocardioides sp. JS614 chromosome, complete genome.
Accession	NC_008699
Length	4,985,871

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The map label for this gene is yhcH [H]

Identifier: 119715137

GI number: 119715137

Start: 932286

End: 933194

Strand: Direct

Name: yhcH [H]

Synonym: Noca_0892

Alternate gene names: 119715137

Gene position: 932286-933194 (Clockwise)

Preceding gene: 119715136

Following gene: 119715138

Centisome position: 18.7

GC content: 75.91

Gene sequence:

>909_bases
GTGGGGTTCACGGAGACCGGCCCGACGCTCTCGGTGGCGGGCCTGGGCAAGACCTTCGGTGCCATCCGGGCCGTGGACGA
CCTGAGCTTCAGCGTCCGGCCGGGGGCCGTCACGGGGTTCCTCGGCCCCAACGGCGCCGGCAAGACGACGACGCTGCGGA
TGCTCCTCGGGCTGACCCGGCCGACGGCCGGGCGAGCGCTCGTCGGTGACCGGCCGTACGCCGAGCACCCGGCCCCGGCA
CGCGTCGTCGGCGCCGCGATCGAGTCCTCCGGCTTCCACCCGGGCCGCACCGGCCTCGCACACCTCGGCGTCTACGCGGC
GCAGGCGGGGGTCGACCGCGCGCGCTGCCGTGAGCTGATCGAGTTCGTCGGGCTCGCCGACGCCGGGGACCGCCGGGTCG
GCGGCTACTCGCTGGGGATGCGGCAGCGGCTGGCGCTGGCGACCGCCCTGCTCGGCGATCCCCCGGCGATCGTCCTCGAC
GAGCCCGCGAACGGCCTGGACCCCGAGGGCATCGTGTGGCTGCGCCAGCTCCTGCGCGCGTTCGCCGCCCAGGGCCGCAC
CGTCCTGGTGTCCAGCCACGTGCTGGCCGAGGTCCAGCACACCGTCGACGACGTCGTGATCATCGCGGACGGTCGGCTGG
TGCACGCCTCGTCGCTGGCGGATCTGGCCGGCCTCGCCGCCCCCGAGACCTACGTCCAGTCGCCGGAGGAGCAGGCGCTG
GCCGACCTGTGCCGCTCGCGGGGCTGGCCGGCCCGGCCCGACGGCGCCGGACTGGTCGTCACCGGAGTGCTGGCCGCCGA
GGTCGGGGCGGCGGCGTACGCCGCGGGGCTCGAGTTGCACCAGCTCGCCAGTCGTGGCGTTGGGCTCGAGGACGTCTTCC
TGCGCCTCACCGGGGGTGCTCGGTCGTGA

Upstream 100 bases:

>100_bases
GCGGGTGATGGTGGAGGCCGCGACCCAGGAGGAGGCGGTGTCCGTCGCCGGACGCCTGGCCGATGTCGTGAAGCGACAGC
TGGCCCTCTAGGGTCATTCC

Downstream 100 bases:

>100_bases
GGGCCGCCCTGGTCGCGGAGTACCGCAAGCTCGTCAGCACCCGGATGTGGTGGCTGCTGCTGATCGTCCTGGCCGGCTAC
CTCGTGTTCATCGGCGTCGT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MGFTETGPTLSVAGLGKTFGAIRAVDDLSFSVRPGAVTGFLGPNGAGKTTTLRMLLGLTRPTAGRALVGDRPYAEHPAPA
RVVGAAIESSGFHPGRTGLAHLGVYAAQAGVDRARCRELIEFVGLADAGDRRVGGYSLGMRQRLALATALLGDPPAIVLD
EPANGLDPEGIVWLRQLLRAFAAQGRTVLVSSHVLAEVQHTVDDVVIIADGRLVHASSLADLAGLAAPETYVQSPEEQAL
ADLCRSRGWPARPDGAGLVVTGVLAAEVGAAAYAAGLELHQLASRGVGLEDVFLRLTGGARS

Sequences:

>Translated_302_residues
MGFTETGPTLSVAGLGKTFGAIRAVDDLSFSVRPGAVTGFLGPNGAGKTTTLRMLLGLTRPTAGRALVGDRPYAEHPAPA
RVVGAAIESSGFHPGRTGLAHLGVYAAQAGVDRARCRELIEFVGLADAGDRRVGGYSLGMRQRLALATALLGDPPAIVLD
EPANGLDPEGIVWLRQLLRAFAAQGRTVLVSSHVLAEVQHTVDDVVIIADGRLVHASSLADLAGLAAPETYVQSPEEQAL
ADLCRSRGWPARPDGAGLVVTGVLAAEVGAAAYAAGLELHQLASRGVGLEDVFLRLTGGARS
>Mature_301_residues
GFTETGPTLSVAGLGKTFGAIRAVDDLSFSVRPGAVTGFLGPNGAGKTTTLRMLLGLTRPTAGRALVGDRPYAEHPAPAR
VVGAAIESSGFHPGRTGLAHLGVYAAQAGVDRARCRELIEFVGLADAGDRRVGGYSLGMRQRLALATALLGDPPAIVLDE
PANGLDPEGIVWLRQLLRAFAAQGRTVLVSSHVLAEVQHTVDDVVIIADGRLVHASSLADLAGLAAPETYVQSPEEQALA
DLCRSRGWPARPDGAGLVVTGVLAAEVGAAAYAAGLELHQLASRGVGLEDVFLRLTGGARS

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=204, Percent_Identity=34.8039215686275, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI6005701, Length=204, Percent_Identity=33.8235294117647, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI150417984, Length=225, Percent_Identity=34.6666666666667, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI27436953, Length=205, Percent_Identity=34.6341463414634, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI45446740, Length=244, Percent_Identity=32.3770491803279, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI47078218, Length=244, Percent_Identity=32.3770491803279, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI153792144, Length=207, Percent_Identity=31.8840579710145, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI105990541, Length=229, Percent_Identity=31.8777292576419, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI27262624, Length=228, Percent_Identity=28.0701754385965, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI27262626, Length=228, Percent_Identity=28.0701754385965, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI116734710, Length=195, Percent_Identity=32.8205128205128, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI21536376, Length=201, Percent_Identity=30.3482587064677, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI31657092, Length=202, Percent_Identity=32.1782178217822, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI27881501, Length=212, Percent_Identity=30.6603773584906, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI30795238, Length=212, Percent_Identity=30.6603773584906, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI73747915, Length=212, Percent_Identity=31.1320754716981, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI215820660, Length=193, Percent_Identity=27.4611398963731, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI20143975, Length=193, Percent_Identity=27.4611398963731, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI9955966, Length=205, Percent_Identity=29.2682926829268, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI45243524, Length=205, Percent_Identity=29.2682926829268, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI9955968, Length=205, Percent_Identity=29.2682926829268, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI73747917, Length=157, Percent_Identity=31.8471337579618, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87081782, Length=303, Percent_Identity=32.3432343234323, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1790525, Length=231, Percent_Identity=27.7056277056277, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1790467, Length=210, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=31.25, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786319, Length=229, Percent_Identity=29.2576419213974, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081709, Length=221, Percent_Identity=28.9592760180996, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI48994943, Length=214, Percent_Identity=30.3738317757009, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790739, Length=222, Percent_Identity=27.9279279279279, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1789593, Length=220, Percent_Identity=30.9090909090909, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788761, Length=219, Percent_Identity=28.7671232876712, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788210, Length=230, Percent_Identity=28.2608695652174, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787712, Length=217, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786398, Length=245, Percent_Identity=27.3469387755102, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081791, Length=166, Percent_Identity=30.7228915662651, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787370, Length=212, Percent_Identity=27.8301886792453, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790190, Length=238, Percent_Identity=26.0504201680672, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787029, Length=245, Percent_Identity=24.0816326530612, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787089, Length=238, Percent_Identity=26.890756302521, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788450, Length=214, Percent_Identity=28.5046728971963, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787547, Length=240, Percent_Identity=27.5, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786872, Length=220, Percent_Identity=28.6363636363636, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788897, Length=230, Percent_Identity=25.6521739130435, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=27.8846153846154, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI48995001, Length=223, Percent_Identity=26.0089686098655, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI2367384, Length=191, Percent_Identity=33.5078534031414, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786253, Length=199, Percent_Identity=29.1457286432161, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787164, Length=208, Percent_Identity=28.8461538461538, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081834, Length=206, Percent_Identity=29.126213592233, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789032, Length=202, Percent_Identity=27.2277227722772, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082268, Length=214, Percent_Identity=27.1028037383178, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082267, Length=211, Percent_Identity=26.0663507109005, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789873, Length=207, Percent_Identity=27.536231884058, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787143, Length=210, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1789890, Length=208, Percent_Identity=29.8076923076923, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787792, Length=219, Percent_Identity=21.9178082191781, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786345, Length=206, Percent_Identity=27.6699029126214, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=229, Percent_Identity=31.0043668122271, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71983523, Length=225, Percent_Identity=28.8888888888889, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71983516, Length=225, Percent_Identity=28.8888888888889, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71983510, Length=225, Percent_Identity=28.8888888888889, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17510237, Length=212, Percent_Identity=29.7169811320755, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115533608, Length=192, Percent_Identity=30.7291666666667, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17565938, Length=223, Percent_Identity=27.8026905829596, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324498, Length=227, Percent_Identity=26.431718061674, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24666092, Length=217, Percent_Identity=31.7972350230415, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI221512771, Length=217, Percent_Identity=30.4147465437788, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI116007184, Length=226, Percent_Identity=29.2035398230088, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI221500365, Length=226, Percent_Identity=29.2035398230088, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24648314, Length=221, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24643674, Length=202, Percent_Identity=29.2079207920792, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI28574150, Length=216, Percent_Identity=29.6296296296296, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI116007328, Length=216, Percent_Identity=29.6296296296296, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI17647959, Length=233, Percent_Identity=29.6137339055794, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28573573, Length=216, Percent_Identity=26.3888888888889, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28573571, Length=216, Percent_Identity=26.3888888888889, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28574744, Length=223, Percent_Identity=29.1479820627803, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI19920532, Length=222, Percent_Identity=27.4774774774775, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580930, Length=222, Percent_Identity=27.4774774774775, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24581191, Length=195, Percent_Identity=25.6410256410256, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24581189, Length=195, Percent_Identity=25.6410256410256, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24581193, Length=195, Percent_Identity=25.6410256410256, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24581195, Length=195, Percent_Identity=25.6410256410256, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24650855, Length=196, Percent_Identity=28.0612244897959, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24650853, Length=196, Percent_Identity=28.0612244897959, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI17136592, Length=201, Percent_Identity=29.3532338308458, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281362751, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17136662, Length=217, Percent_Identity=28.110599078341, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 31103; Mature: 30972

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFTETGPTLSVAGLGKTFGAIRAVDDLSFSVRPGAVTGFLGPNGAGKTTTLRMLLGLTR
CCCCCCCCEEEEECCCHHHHHHHHHHCCCEEECCCCEEECCCCCCCCHHHHHHHHHHCCC
PTAGRALVGDRPYAEHPAPARVVGAAIESSGFHPGRTGLAHLGVYAAQAGVDRARCRELI
CCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
EFVGLADAGDRRVGGYSLGMRQRLALATALLGDPPAIVLDEPANGLDPEGIVWLRQLLRA
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHH
FAAQGRTVLVSSHVLAEVQHTVDDVVIIADGRLVHASSLADLAGLAAPETYVQSPEEQAL
HHHCCCEEEEEHHHHHHHHHHHCCEEEEECCCEEEHHHHHHHHHCCCCHHHHCCCHHHHH
ADLCRSRGWPARPDGAGLVVTGVLAAEVGAAAYAAGLELHQLASRGVGLEDVFLRLTGGA
HHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCC
RS
CC
>Mature Secondary Structure 
GFTETGPTLSVAGLGKTFGAIRAVDDLSFSVRPGAVTGFLGPNGAGKTTTLRMLLGLTR
CCCCCCCEEEEECCCHHHHHHHHHHCCCEEECCCCEEECCCCCCCCHHHHHHHHHHCCC
PTAGRALVGDRPYAEHPAPARVVGAAIESSGFHPGRTGLAHLGVYAAQAGVDRARCRELI
CCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
EFVGLADAGDRRVGGYSLGMRQRLALATALLGDPPAIVLDEPANGLDPEGIVWLRQLLRA
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHH
FAAQGRTVLVSSHVLAEVQHTVDDVVIIADGRLVHASSLADLAGLAAPETYVQSPEEQAL
HHHCCCEEEEEHHHHHHHHHHHCCEEEEECCCEEEHHHHHHHHHCCCCHHHHCCCHHHHH
ADLCRSRGWPARPDGAGLVVTGVLAAEVGAAAYAAGLELHQLASRGVGLEDVFLRLTGGA
HHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCC
RS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]