| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is fur [H]
Identifier: 119715119
GI number: 119715119
Start: 912634
End: 913074
Strand: Direct
Name: fur [H]
Synonym: Noca_0874
Alternate gene names: 119715119
Gene position: 912634-913074 (Clockwise)
Preceding gene: 119715118
Following gene: 119715120
Centisome position: 18.3
GC content: 75.06
Gene sequence:
>441_bases ATGGCGACGACCACGGACCGCACCCGGGACTTCCCGGAGCTGCTGCGCGGTGCGGCGCTGCGGGTGACCCGCCCGCGGCT CGCCGTGCTGGGCGCCGTGCACGCGCTGCCGCACGCCGACACCGAGTCGATCATCGGTGCCGTCCGCGAGGGCCTCCCCG GCGTCTCGCACCAGGCCGTCTACGACTCGCTGCACGCCCTGACCGCCGCCGGCCTGGTACGGCGCATCCAGCCCGCCGGC TCGGTCGCGCGCTACGAGGCGCGCGTCGGCGACAACCACCACCACGTGGTGTGCCGCGCGTGCGGGATCGTCGCCGACGT CGACTGCGCCGTCGGCGGCGCGCCCTGCCTGACCGCTTCGGACGACCACGGCTTCCGCATCGACGAGGCCGAGGTCGTCT ACTGGGGCATCTGCCCCGCCTGCTCGACCACCCGATCGTGA
Upstream 100 bases:
>100_bases TCGCTCGCGAGGTACCCCTCCCGTGCGGAGCTGCTCGGTGTCGAGGAGACCGTGCCACCCCTTTCTTGACTCATTCCAGA AAGGTCGCAAGACTGCGGCC
Downstream 100 bases:
>100_bases CCGCCAACGCCCGTCCGGAAGGAAGACCATGACCGACAGCCAGGACAACCGCACCCCCGAGAGCCCGCAGGGCGTCGACC GGAAGGCGGAGGGTGGGTGC
Product: ferric-uptake regulator
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MATTTDRTRDFPELLRGAALRVTRPRLAVLGAVHALPHADTESIIGAVREGLPGVSHQAVYDSLHALTAAGLVRRIQPAG SVARYEARVGDNHHHVVCRACGIVADVDCAVGGAPCLTASDDHGFRIDEAEVVYWGICPACSTTRS
Sequences:
>Translated_146_residues MATTTDRTRDFPELLRGAALRVTRPRLAVLGAVHALPHADTESIIGAVREGLPGVSHQAVYDSLHALTAAGLVRRIQPAG SVARYEARVGDNHHHVVCRACGIVADVDCAVGGAPCLTASDDHGFRIDEAEVVYWGICPACSTTRS >Mature_145_residues ATTTDRTRDFPELLRGAALRVTRPRLAVLGAVHALPHADTESIIGAVREGLPGVSHQAVYDSLHALTAAGLVRRIQPAGS VARYEARVGDNHHHVVCRACGIVADVDCAVGGAPCLTASDDHGFRIDEAEVVYWGICPACSTTRS
Specific function: Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 15434; Mature: 15302
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 4.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATTTDRTRDFPELLRGAALRVTRPRLAVLGAVHALPHADTESIIGAVREGLPGVSHQAV CCCCCCCCCCHHHHHCCCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHH YDSLHALTAAGLVRRIQPAGSVARYEARVGDNHHHVVCRACGIVADVDCAVGGAPCLTAS HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEHEEHHCCCEECCCCCCCCCEEECC DDHGFRIDEAEVVYWGICPACSTTRS CCCCEEECCCCEEEEECCCCCCCCCC >Mature Secondary Structure ATTTDRTRDFPELLRGAALRVTRPRLAVLGAVHALPHADTESIIGAVREGLPGVSHQAV CCCCCCCCCHHHHHCCCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHH YDSLHALTAAGLVRRIQPAGSVARYEARVGDNHHHVVCRACGIVADVDCAVGGAPCLTAS HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEHEEHHCCCEECCCCCCCCCEEECC DDHGFRIDEAEVVYWGICPACSTTRS CCCCEEECCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]